Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

29489991 .. 29491164

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG272300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAAGTGTTGACTTCTGCACAAGAGTTGTTCACCCAGCTTCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCGTCAACGTCTAGTAATGCATCAGAGCGTGAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

167

Amino Acids

17.7

Weight (kDa)

4.18

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	307, 484
AcuI	CTGAAG	3 cut(s)	26, 90, 414
AfaI	GTAC	2 cut(s)	123, 470
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	76, 113, 437
AluBI	AGCT	3 cut(s)	40, 116, 155
AluI	AGCT	3 cut(s)	40, 116, 155
Alw26I	GTCTC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	307, 484
AspS9I	GGNCC	2 cut(s)	178, 353
AsuHPI	GGTGA	2 cut(s)	25, 464
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	178, 353
BanI	GGYRCC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbvI	GCAGC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	3 cut(s)	366, 401, 444
BfmI	CTRYAG	2 cut(s)	94, 255
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	178, 353
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	178, 353
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	4 cut(s)	91, 217, 383, 403
BsaI	GGTCTC	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	184, 219
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	184, 219
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	254, 263
BstDEI	CTNAG	2 cut(s)	151, 243
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstSFI	CTRYAG	2 cut(s)	94, 255
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	3 cut(s)	103, 194, 420
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	178, 353
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	122, 469
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	40, 116, 131, 155, 476
CviKI_1	RGCY	5 cut(s)	40, 116, 131, 155, 476
CviQI	GTAC	2 cut(s)	122, 469
DdeI	CTNAG	2 cut(s)	151, 243
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	178, 353
Eco57I	CTGAAG	3 cut(s)	26, 90, 414
Eco88I	CYCGRG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	376
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	61, 128, 429, 461
FaqI	GGGAC	2 cut(s)	184, 219
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	366, 401, 444
GluI	GCNGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	2 cut(s)	12, 360
HindII	GTYRAC	2 cut(s)	12, 360
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	1 cut(s)	76
HphI	GGTGA	2 cut(s)	25, 464
Hpy166II	GTNNAC	6 cut(s)	12, 33, 91, 194, 360, 386
Hpy188I	TCNGA	4 cut(s)	45, 244, 286, 379
Hpy188III	TCNNGA	2 cut(s)	73, 204
Hpy8I	GTNNAC	6 cut(s)	12, 33, 91, 194, 360, 386
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	6 cut(s)	20, 160, 257, 293, 305, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	2 cut(s)	151, 243
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	50, 146, 194, 267
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	4 cut(s)	91, 217, 383, 403
MaeI	CTAG	3 cut(s)	366, 401, 444
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	2 cut(s)	47, 407
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	5 cut(s)	51, 249, 294, 307, 484
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	74, 161, 238, 344
Mph1103I	ATGCAT	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	178, 353
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	123, 470
RsaNI	GTAC	2 cut(s)	122, 469
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	178, 353
ScaI	AGTACT	1 cut(s)	470
SetI	ASST	6 cut(s)	42, 118, 157, 355, 365, 454
SfaNI	GCATC	4 cut(s)	91, 217, 383, 403
SfcI	CTRYAG	2 cut(s)	94, 255
SinI	GGWCC	2 cut(s)	178, 353
Sse9I	AATT	5 cut(s)	51, 249, 294, 307, 484
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	366, 401, 444
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	79
TasI	AATT	5 cut(s)	51, 249, 294, 307, 484
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	76
TscAI	CASTG	3 cut(s)	103, 201, 427
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	103, 201, 427
VpaK11BI	GGWCC	2 cut(s)	178, 353
XapI	RAATTY	2 cut(s)	307, 484
XspI	CTAG	3 cut(s)	366, 401, 444
ZrmI	AGTACT	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.