Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

1815419 .. 1819492

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCTAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAACTGAGAAAGAGAATGGACAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGGGCGAAATAAGGCAAATCCTTTTAAGTATTGGCTGCCAGAAGGAAGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGATTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGAGAAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTTTCTCTGCGATCCATCGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAAAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCAGCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTGTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

262

Amino Acids

29.89

Weight (kDa)

7.61

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	3 - 34	9.1e-11	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	337, 456
AcsI	RAATTY	3 cut(s)	40, 106, 497
AcuI	CTGAAG	3 cut(s)	553, 662, 706
AfaI	GTAC	4 cut(s)	28, 294, 321, 657
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflII	CTTAAG	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	278, 286, 299, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	5 cut(s)	32, 152, 535, 589, 676
AluI	AGCT	5 cut(s)	32, 152, 535, 589, 676
Alw21I	GWGCWC	2 cut(s)	432, 537
Alw26I	GTCTC	3 cut(s)	244, 329, 464
AlwI	GGATC	2 cut(s)	337, 456
AlwNI	CAGNNNCTG	1 cut(s)	685
ApeKI	GCWGC	4 cut(s)	152, 199, 227, 589
ApoI	RAATTY	3 cut(s)	40, 106, 497
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	98, 661
BaeGI	GKGCMC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	432, 537
BbvI	GCAGC	4 cut(s)	139, 186, 214, 576
BccI	CCATC	3 cut(s)	254, 473, 782
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	244, 329, 464
BfrI	CTTAAG	1 cut(s)	100
BisI	GCNGC	5 cut(s)	153, 200, 228, 590, 606
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	5 cut(s)	154, 201, 229, 591, 607
BmcAI	AGTACT	1 cut(s)	294
BmsI	GCATC	2 cut(s)	164, 406
BpmI	CTGGAG	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	484, 588
Bse3DI	GCAATG	2 cut(s)	266, 426
BseGI	GGATG	2 cut(s)	694, 759
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	2 cut(s)	266, 426
BseMII	CTCAG	5 cut(s)	105, 235, 445, 500, 740
BseNI	ACTGG	2 cut(s)	484, 588
BseRI	GAGGAG	2 cut(s)	455, 458
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	4 cut(s)	139, 186, 214, 576
BseYI	CCCAGC	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	432, 537
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	3 cut(s)	244, 329, 464
Bsp1286I	GDGCHC	3 cut(s)	432, 537, 748
Bsp1407I	TGTACA	2 cut(s)	26, 655
Bsp143I	GATC	4 cut(s)	88, 329, 340, 461
Bsp1720I	GCTNAGC	1 cut(s)	431
BspACI	CCGC	1 cut(s)	605
BspCNI	CTCAG	5 cut(s)	106, 234, 444, 499, 741
BspHI	TCATGA	1 cut(s)	354
BspPI	GGATC	2 cut(s)	337, 456
BspTI	CTTAAG	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	266, 426
BsrGI	TGTACA	2 cut(s)	26, 655
BsrI	ACTGG	2 cut(s)	484, 588
BssMI	GATC	4 cut(s)	88, 329, 340, 461
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst6I	CTCTTC	2 cut(s)	242, 555
BstAFI	CTTAAG	1 cut(s)	100
BstAUI	TGTACA	2 cut(s)	26, 655
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	5 cut(s)	114, 221, 431, 486, 749
BstF5I	GGATG	2 cut(s)	694, 759
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	4 cut(s)	91, 332, 343, 464
BstMAI	GTCTC	3 cut(s)	244, 329, 464
BstMBI	GATC	4 cut(s)	88, 329, 340, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 682
BstNSI	RCATGY	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	4 cut(s)	139, 186, 214, 576
BtsCI	GGATG	2 cut(s)	694, 759
BtsIMutI	CAGTG	2 cut(s)	494, 746
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	685
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	27, 293, 320, 656
CviAII	CATG	4 cut(s)	254, 355, 436, 538
CviQI	GTAC	4 cut(s)	27, 293, 320, 656
DdeI	CTNAG	5 cut(s)	114, 221, 431, 486, 749
DpnI	GATC	4 cut(s)	90, 331, 342, 463
DpnII	GATC	4 cut(s)	88, 329, 340, 461
Eam1104I	CTCTTC	2 cut(s)	242, 555
EarI	CTCTTC	2 cut(s)	242, 555
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	537
Eco32I	GATATC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	3 cut(s)	553, 662, 706
EcoICRI	GAGCTC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	497
EcoRV	GATATC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	4 cut(s)	257, 358, 439, 541
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	4 cut(s)	253, 354, 435, 537
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	153, 200, 228, 590, 606
FokI	GGATG	2 cut(s)	701, 766
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	5 cut(s)	153, 200, 228, 590, 606
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	5 cut(s)	153, 200, 228, 590, 606
GsaI	CCCAGC	1 cut(s)	676
GsuI	CTGGAG	1 cut(s)	605
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	257, 358, 439, 541
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	4 cut(s)	219, 547, 563, 692
HphI	GGTGA	2 cut(s)	98, 661
Hpy166II	GTNNAC	3 cut(s)	218, 648, 669
Hpy188I	TCNGA	6 cut(s)	93, 160, 306, 334, 572, 725
Hpy188III	TCNNGA	4 cut(s)	355, 469, 526, 764
Hpy8I	GTNNAC	3 cut(s)	218, 648, 669
HpyAV	CCTTC	7 cut(s)	50, 200, 204, 514, 577, 590, 634
HpyCH4V	TGCA	4 cut(s)	38, 155, 383, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 682
HpyF3I	CTNAG	5 cut(s)	114, 221, 431, 486, 749
Hsp92II	CATG	4 cut(s)	257, 358, 439, 541
HspAI	GCGC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	88, 329, 340, 461
LmnI	GCTCC	3 cut(s)	26, 235, 586
Lsp1109I	GCAGC	4 cut(s)	139, 186, 214, 576
LweI	GCATC	2 cut(s)	164, 406
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	4 cut(s)	90, 331, 342, 463
MboI	GATC	4 cut(s)	88, 329, 340, 461
MboII	GAAGA	6 cut(s)	25, 72, 259, 290, 325, 542
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	3 cut(s)	432, 537, 748
MluCI	AATT	5 cut(s)	40, 106, 273, 406, 497
MlyI	GAGTC	3 cut(s)	213, 541, 557
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	433, 436, 439, 744
MseI	TTAA	4 cut(s)	101, 110, 189, 396
MslI	CAYNNNNRTG	2 cut(s)	258, 378
MspCI	CTTAAG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	236, 682
NdeII	GATC	4 cut(s)	88, 329, 340, 461
NlaIII	CATG	4 cut(s)	257, 358, 439, 541
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	154, 201, 229, 591, 607
PleI	GAGTC	3 cut(s)	213, 541, 557
PpsI	GAGTC	3 cut(s)	213, 541, 557
Psp124BI	GAGCTC	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	685
RsaI	GTAC	4 cut(s)	28, 294, 321, 657
RsaNI	GTAC	4 cut(s)	27, 293, 320, 656
RseI	CAYNNNNRTG	2 cut(s)	258, 378
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	101, 110, 189, 396
SatI	GCNGC	5 cut(s)	153, 200, 228, 590, 606
Sau3AI	GATC	4 cut(s)	88, 329, 340, 461
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	3 cut(s)	213, 541, 557
SduI	GDGCHC	3 cut(s)	432, 537, 748
SfaNI	GCATC	2 cut(s)	164, 406
SmiMI	CAYNNNNRTG	2 cut(s)	258, 378
SmlI	CTYRAG	2 cut(s)	100, 505
SmoI	CTYRAG	2 cut(s)	100, 505
Sse9I	AATT	5 cut(s)	40, 106, 273, 406, 497
SsiI	CCGC	1 cut(s)	605
SstI	GAGCTC	1 cut(s)	537
TaqI	TCGA	2 cut(s)	245, 468
TasI	AATT	5 cut(s)	40, 106, 273, 406, 497
TatI	WGTACW	4 cut(s)	26, 292, 319, 655
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	4 cut(s)	101, 110, 189, 396
Tru9I	TTAA	4 cut(s)	101, 110, 189, 396
TscAI	CASTG	2 cut(s)	494, 753
TseI	GCWGC	4 cut(s)	152, 199, 227, 589
TspDTI	ATGAA	4 cut(s)	26, 255, 653, 705
TspRI	CASTG	2 cut(s)	494, 753
Vha464I	CTTAAG	1 cut(s)	100
XapI	RAATTY	3 cut(s)	40, 106, 497
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.