Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

29068485 .. 29081148

Gene Structure 12664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATATGAGCATGAACACGCACCAAGTTTTCAAGACCTGCAGTCATAGTAGTATTCGACGTGATTACGGGGTGAAAGGTGACTGGTTGTGGCTGCAGGTGCTAAATCAGATAAATGCTACTTCACCAAATCTCCCTGCTGTTTCTTCAGTAATGCTTCTAAGGAGCAGTATGGGTATTACTGAAGCATTGCAATTGCAGGTCCAAAAGCGGCTTCATGAACAACTTGAGGATTGGTTGGTATATCTGTTGTCATTGATTGCAAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGCAATCATGATGAGCCTGCTGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTCCATGCTTAGAGACATCAACTGGTTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACTAGCTCATGGAGAGGACTCTTCTTGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGGTAATTGGAAAGGAGAAGGGCCGTGTCATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

270

Amino Acids

30.64

Weight (kDa)

6.45

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	4 cut(s)	47, 88, 190, 641
AciI	CCGC	3 cut(s)	211, 388, 707
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	3 cut(s)	132, 204, 629
AfaI	GTAC	3 cut(s)	336, 363, 759
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	34, 320, 328, 341, 605
AhdI	GACNNNNNGTC	1 cut(s)	42
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	774
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	3 cut(s)	487, 611, 691
AluI	AGCT	3 cut(s)	487, 611, 691
Alw21I	GWGCWC	2 cut(s)	474, 673
Alw26I	GTCTC	3 cut(s)	286, 371, 540
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	796
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	94, 269, 691
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	202, 796
AsuHPI	GGTGA	5 cut(s)	85, 92, 117, 707, 763
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	673
Bbv12I	GWGCWC	2 cut(s)	474, 673
BbvI	GCAGC	3 cut(s)	81, 256, 678
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	783
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	286, 371, 540
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	2 cut(s)	40, 95
BfuAI	ACCTGC	4 cut(s)	47, 88, 190, 641
BisI	GCNGC	5 cut(s)	95, 212, 270, 692, 708
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	5 cut(s)	96, 213, 271, 693, 709
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	1 cut(s)	202
BmeRI	GACNNNNNGTC	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	202, 796
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	2 cut(s)	248, 602
Bsa29I	ATCGAT	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	718, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	3 cut(s)	89, 560, 690
Bse3DI	GCAATG	3 cut(s)	188, 308, 468
BseBI	CCWGG	1 cut(s)	776
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	718, 774
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	3 cut(s)	188, 308, 468
BseMII	CTCAG	2 cut(s)	487, 576
BseNI	ACTGG	3 cut(s)	89, 560, 690
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	81, 256, 678
BshFI	GGCC	1 cut(s)	798
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	2 cut(s)	474, 673
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	3 cut(s)	286, 371, 540
BsnI	GGCC	1 cut(s)	798
Bsp1286I	GDGCHC	2 cut(s)	474, 673
Bsp1407I	TGTACA	1 cut(s)	757
Bsp143I	GATC	2 cut(s)	371, 382
Bsp1720I	GCTNAGC	1 cut(s)	473
BspACI	CCGC	3 cut(s)	211, 388, 707
BspANI	GGCC	1 cut(s)	798
BspCNI	CTCAG	2 cut(s)	486, 575
BspDI	ATCGAT	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	217, 396
BspMAI	CTGCAG	2 cut(s)	44, 99
BspMI	ACCTGC	4 cut(s)	47, 88, 190, 641
BspPI	GGATC	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	188, 308, 468
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	89, 560, 690
BssECI	CCNNGG	2 cut(s)	718, 774
BssMI	GATC	2 cut(s)	371, 382
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	2 cut(s)	284, 631
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	757
BstC8I	GCNNGC	3 cut(s)	390, 407, 669
BstDEI	CTNAG	4 cut(s)	161, 473, 542, 562
BstDSI	CCRYGG	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	374, 385
BstMAI	GTCTC	3 cut(s)	286, 371, 540
BstMBI	GATC	2 cut(s)	371, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 269, 278
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	2 cut(s)	40, 95
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	3 cut(s)	81, 256, 678
BstXI	CCANNNNNNTGG	1 cut(s)	782
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	798
BsuTUI	ATCGAT	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	718
BtrI	CACGTC	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	570, 808
BveI	ACCTGC	4 cut(s)	47, 88, 190, 641
Cac8I	GCNNGC	3 cut(s)	390, 407, 669
CciI	TCATGA	2 cut(s)	217, 396
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	202, 796
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	335, 362, 758
CviAII	CATG	8 cut(s)	13, 218, 296, 397, 478, 538, 614, 805
CviJI	RGCY	9 cut(s)	94, 214, 269, 405, 487, 590, 611, 691, 798
CviKI_1	RGCY	9 cut(s)	94, 214, 269, 405, 487, 590, 611, 691, 798
CviQI	GTAC	3 cut(s)	335, 362, 758
DdeI	CTNAG	4 cut(s)	161, 473, 542, 562
DpnI	GATC	2 cut(s)	373, 384
DpnII	GATC	2 cut(s)	371, 382
DriI	GACNNNNNGTC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	284, 631
Eam1105I	GACNNNNNGTC	1 cut(s)	42
EarI	CTCTTC	2 cut(s)	284, 631
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	132, 204, 629
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	774
FaeI	CATG	8 cut(s)	16, 221, 299, 400, 481, 541, 617, 808
FatI	CATG	8 cut(s)	12, 217, 295, 396, 477, 537, 613, 804
FauI	CCCGC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	5 cut(s)	95, 212, 270, 692, 708
Fsp4HI	GCNGC	5 cut(s)	95, 212, 270, 692, 708
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	5 cut(s)	95, 212, 270, 692, 708
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	798
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	8 cut(s)	16, 221, 299, 400, 481, 541, 617, 808
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	2 cut(s)	623, 639
HphI	GGTGA	5 cut(s)	85, 92, 117, 707, 763
Hpy166II	GTNNAC	3 cut(s)	671, 750, 771
Hpy188I	TCNGA	3 cut(s)	111, 348, 376
Hpy188III	TCNNGA	5 cut(s)	34, 218, 397, 602, 662
Hpy8I	GTNNAC	3 cut(s)	671, 750, 771
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	6 cut(s)	510, 590, 653, 692, 736, 787
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 269, 278
HpyF3I	CTNAG	4 cut(s)	161, 473, 542, 562
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	8 cut(s)	16, 221, 299, 400, 481, 541, 617, 808
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	371, 382
LmnI	GCTCC	4 cut(s)	165, 277, 484, 688
Lsp1109I	GCAGC	3 cut(s)	81, 256, 678
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	80, 411
MalI	GATC	2 cut(s)	373, 384
MboI	GATC	2 cut(s)	371, 382
MboII	GAAGA	5 cut(s)	138, 301, 332, 367, 618
MfeI	CAATTG	2 cut(s)	194, 315
MhlI	GDGCHC	2 cut(s)	474, 673
MluCI	AATT	5 cut(s)	194, 315, 448, 573, 780
MlyI	GAGTC	2 cut(s)	617, 633
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	3 cut(s)	223, 475, 613
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	2 cut(s)	300, 420
MspA1I	CMGCKG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	776
MunI	CAATTG	2 cut(s)	194, 315
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	100, 269, 278
NdeII	GATC	2 cut(s)	371, 382
NlaIII	CATG	8 cut(s)	16, 221, 299, 400, 481, 541, 617, 808
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	2 cut(s)	217, 396
PaqCI	CACCTGC	1 cut(s)	88
PkrI	GCNGC	5 cut(s)	96, 213, 271, 693, 709
PleI	GAGTC	2 cut(s)	617, 633
PpsI	GAGTC	2 cut(s)	617, 633
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspPI	GGNCC	2 cut(s)	202, 796
PstI	CTGCAG	2 cut(s)	44, 99
RsaI	GTAC	3 cut(s)	336, 363, 759
RsaNI	GTAC	3 cut(s)	335, 362, 758
RseI	CAYNNNNRTG	2 cut(s)	300, 420
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	95, 212, 270, 692, 708
Sau3AI	GATC	2 cut(s)	371, 382
Sau96I	GGNCC	2 cut(s)	202, 796
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	2 cut(s)	617, 633
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	2 cut(s)	474, 673
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	2 cut(s)	40, 95
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	300, 420
SmlI	CTYRAG	2 cut(s)	227, 581
SmoI	CTYRAG	2 cut(s)	227, 581
Sse9I	AATT	5 cut(s)	194, 315, 448, 573, 780
SsiI	CCGC	3 cut(s)	211, 388, 707
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	4 cut(s)	58, 287, 492, 516
TasI	AATT	5 cut(s)	194, 315, 448, 573, 780
TatI	WGTACW	3 cut(s)	334, 361, 757
TauI	GCSGC	2 cut(s)	214, 710
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	94, 269, 691
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	5 cut(s)	29, 206, 234, 297, 755
TspRI	CASTG	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	669
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.