NEDD8 ultimate buster
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 88 |
| AclWI | GGATC | 2 cut(s) | 79, 206 |
| AfaI | GTAC | 2 cut(s) | 36, 63 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AluBI | AGCT | 1 cut(s) | 229 |
| AluI | AGCT | 1 cut(s) | 229 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 2 cut(s) | 71, 282 |
| AlwI | GGATC | 2 cut(s) | 79, 206 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BccI | CCATC | 1 cut(s) | 223 |
| BclI | TGATCA | 1 cut(s) | 82 |
| BcoDI | GTCTC | 2 cut(s) | 71, 282 |
| BfaI | CTAG | 1 cut(s) | 298 |
| BlpI | GCTNAGC | 1 cut(s) | 173 |
| BmcAI | AGTACT | 1 cut(s) | 36 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 185, 217 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 173 |
| Bsa29I | ATCGAT | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 2 cut(s) | 13, 168 |
| BseCI | ATCGAT | 1 cut(s) | 258 |
| BseMI | GCAATG | 2 cut(s) | 13, 168 |
| BseMII | CTCAG | 1 cut(s) | 187 |
| BseRI | GAGGAG | 4 cut(s) | 197, 200, 203, 206 |
| BshVI | ATCGAT | 1 cut(s) | 258 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BsmAI | GTCTC | 2 cut(s) | 71, 282 |
| Bsp1286I | GDGCHC | 1 cut(s) | 174 |
| Bsp143I | GATC | 3 cut(s) | 71, 82, 211 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 173 |
| BspACI | CCGC | 1 cut(s) | 88 |
| BspCNI | CTCAG | 1 cut(s) | 186 |
| BspDI | ATCGAT | 1 cut(s) | 258 |
| BspHI | TCATGA | 1 cut(s) | 96 |
| BspPI | GGATC | 2 cut(s) | 79, 206 |
| BsrDI | GCAATG | 2 cut(s) | 13, 168 |
| BssMI | GATC | 3 cut(s) | 71, 82, 211 |
| BstC8I | GCNNGC | 1 cut(s) | 90 |
| BstDEI | CTNAG | 2 cut(s) | 173, 284 |
| BstKTI | GATC | 3 cut(s) | 74, 85, 214 |
| BstMAI | GTCTC | 2 cut(s) | 71, 282 |
| BstMBI | GATC | 3 cut(s) | 71, 82, 211 |
| Bsu15I | ATCGAT | 1 cut(s) | 258 |
| BsuTUI | ATCGAT | 1 cut(s) | 258 |
| Cac8I | GCNNGC | 1 cut(s) | 90 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| CciI | TCATGA | 1 cut(s) | 96 |
| ClaI | ATCGAT | 1 cut(s) | 258 |
| Csp6I | GTAC | 2 cut(s) | 35, 62 |
| CviAII | CATG | 3 cut(s) | 97, 178, 280 |
| CviJI | RGCY | 3 cut(s) | 105, 197, 229 |
| CviKI_1 | RGCY | 3 cut(s) | 105, 197, 229 |
| CviQI | GTAC | 2 cut(s) | 35, 62 |
| DdeI | CTNAG | 2 cut(s) | 173, 284 |
| DpnI | GATC | 3 cut(s) | 73, 84, 213 |
| DpnII | GATC | 3 cut(s) | 71, 82, 211 |
| FaeI | CATG | 3 cut(s) | 100, 181, 283 |
| FaiI | YATR | 7 cut(s) | 98, 117, 179, 248, 263, 281, 293 |
| FatI | CATG | 3 cut(s) | 96, 177, 279 |
| FauI | CCCGC | 1 cut(s) | 81 |
| FbaI | TGATCA | 1 cut(s) | 82 |
| FspBI | CTAG | 1 cut(s) | 298 |
| Hin1II | CATG | 3 cut(s) | 100, 181, 283 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 76 |
| Hpy188III | TCNNGA | 1 cut(s) | 97 |
| HpyAV | CCTTC | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 3 cut(s) | 125, 161, 253 |
| HpyF3I | CTNAG | 2 cut(s) | 173, 284 |
| Hsp92II | CATG | 3 cut(s) | 100, 181, 283 |
| Ksp22I | TGATCA | 1 cut(s) | 82 |
| Kzo9I | GATC | 3 cut(s) | 71, 82, 211 |
| LpnPI | CCDG | 2 cut(s) | 119, 215 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeI | CTAG | 1 cut(s) | 298 |
| MaeIII | GTNAC | 1 cut(s) | 111 |
| MalI | GATC | 3 cut(s) | 73, 84, 213 |
| MboI | GATC | 3 cut(s) | 71, 82, 211 |
| MboII | GAAGA | 2 cut(s) | 37, 67 |
| MfeI | CAATTG | 1 cut(s) | 20 |
| MhlI | GDGCHC | 1 cut(s) | 174 |
| MluCI | AATT | 2 cut(s) | 20, 148 |
| MnlI | CCTC | 5 cut(s) | 175, 178, 181, 184, 187 |
| MseI | TTAA | 2 cut(s) | 138, 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 120 |
| MspA1I | CMGCKG | 1 cut(s) | 88 |
| MunI | CAATTG | 1 cut(s) | 20 |
| NdeII | GATC | 3 cut(s) | 71, 82, 211 |
| NlaIII | CATG | 3 cut(s) | 100, 181, 283 |
| PagI | TCATGA | 1 cut(s) | 96 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| RsaI | GTAC | 2 cut(s) | 36, 63 |
| RsaNI | GTAC | 2 cut(s) | 35, 62 |
| RseI | CAYNNNNRTG | 1 cut(s) | 120 |
| SaqAI | TTAA | 2 cut(s) | 138, 225 |
| Sau3AI | GATC | 3 cut(s) | 71, 82, 211 |
| ScaI | AGTACT | 1 cut(s) | 36 |
| SduI | GDGCHC | 1 cut(s) | 174 |
| SetI | ASST | 1 cut(s) | 231 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SgeI | CNNG | 8 cut(s) | 50, 101, 109, 118, 167, 190, 242, 292 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 120 |
| Sse9I | AATT | 2 cut(s) | 20, 148 |
| SsiI | CCGC | 1 cut(s) | 88 |
| SspMI | CTAG | 1 cut(s) | 298 |
| TaqI | TCGA | 2 cut(s) | 234, 258 |
| TasI | AATT | 2 cut(s) | 20, 148 |
| TatI | WGTACW | 2 cut(s) | 34, 61 |
| Tru1I | TTAA | 2 cut(s) | 138, 225 |
| Tru9I | TTAA | 2 cut(s) | 138, 225 |
| TspDTI | ATGAA | 1 cut(s) | 268 |
| XspI | CTAG | 1 cut(s) | 298 |
| ZrmI | AGTACT | 1 cut(s) | 36 |