Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

29081367 .. 29084432

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACAGTGGAGAAGGCATTGGATTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCCAGCAGTAGATGCTTCAGTTGAAGCTTTTGCACGCATGGCCTTTGACAGATCATTAGCAATCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCTAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCCGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTATTGCATCAGAGCGTGAACTTGCTGAGGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGAAAAGGTGAAGTCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACAAATGAATATCACTCTGCCAATAAGAATTGCGACTTTAACAACCATGCATGTACATGTATAATAACAATAGGTCAAGGATCTAGTTATGGTGATGGTGTTCCAGATGATCAATGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

207

Amino Acids

21.78

Weight (kDa)

4.18

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	313, 490
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	476, 556
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	68, 116, 366, 443
AluBI	AGCT	2 cut(s)	119, 161
AluI	AGCT	2 cut(s)	119, 161
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	589
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	313, 490
AspS9I	GGNCC	2 cut(s)	184, 359
AsuHPI	GGTGA	2 cut(s)	470, 605
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	184, 359
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	4 cut(s)	372, 407, 450, 585
BfmI	CTRYAG	2 cut(s)	86, 261
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	184, 359
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	184, 359
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	4 cut(s)	94, 223, 389, 409
Bpu10I	CCTNAGC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	240, 390
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	190, 225
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	190, 225
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	143, 581, 610
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	241, 391
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	554
BssMI	GATC	3 cut(s)	143, 581, 610
Bst4CI	ACNGT	2 cut(s)	7, 90
BstAPI	GCANNNNNTGC	3 cut(s)	104, 260, 269
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	157, 249, 399
BstKTI	GATC	3 cut(s)	146, 584, 613
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	143, 581, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 131, 158, 260, 269
BstNSI	RCATGY	2 cut(s)	555, 561
BstSFI	CTRYAG	2 cut(s)	86, 261
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	4 cut(s)	12, 95, 200, 426
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	184, 359
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	475, 555
CviAII	CATG	4 cut(s)	130, 548, 552, 558
CviJI	RGCY	4 cut(s)	119, 134, 161, 482
CviKI_1	RGCY	4 cut(s)	119, 134, 161, 482
CviQI	GTAC	2 cut(s)	475, 555
DdeI	CTNAG	3 cut(s)	157, 249, 399
DpnI	GATC	3 cut(s)	145, 583, 612
DpnII	GATC	3 cut(s)	143, 581, 610
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	184, 359
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	4 cut(s)	133, 551, 555, 561
FaiI	YATR	9 cut(s)	53, 131, 435, 467, 549, 553, 559, 563, 591
FaqI	GGGAC	2 cut(s)	190, 225
FatI	CATG	4 cut(s)	129, 547, 551, 557
FauI	CCCGC	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	4 cut(s)	372, 407, 450, 585
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	133, 551, 555, 561
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	2 cut(s)	470, 605
Hpy166II	GTNNAC	3 cut(s)	83, 200, 392
Hpy188I	TCNGA	3 cut(s)	250, 292, 385
Hpy188III	TCNNGA	4 cut(s)	35, 65, 210, 605
Hpy8I	GTNNAC	3 cut(s)	83, 200, 392
HpyAV	CCTTC	2 cut(s)	7, 372
HpyCH4III	ACNGT	2 cut(s)	7, 90
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	7 cut(s)	125, 166, 263, 299, 311, 380, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 131, 158, 260, 269
HpyF3I	CTNAG	3 cut(s)	157, 249, 399
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	133, 551, 555, 561
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	143, 581, 610
LpnPI	CCDG	6 cut(s)	48, 108, 152, 200, 273, 618
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	4 cut(s)	94, 223, 389, 409
MaeI	CTAG	4 cut(s)	372, 407, 450, 585
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	3 cut(s)	145, 583, 612
MboI	GATC	3 cut(s)	143, 581, 610
MboII	GAAGA	1 cut(s)	39
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	6 cut(s)	43, 255, 300, 313, 490, 529
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	5 cut(s)	66, 167, 244, 350, 394
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	5 cut(s)	104, 131, 158, 260, 269
NdeII	GATC	3 cut(s)	143, 581, 610
NlaIII	CATG	4 cut(s)	133, 551, 555, 561
NlaIV	GGNNCC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	2 cut(s)	555, 561
PciI	ACATGT	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	184, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	2 cut(s)	476, 556
RsaNI	GTAC	2 cut(s)	475, 555
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	143, 581, 610
Sau96I	GGNCC	2 cut(s)	184, 359
ScaI	AGTACT	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	121, 163, 223, 361, 371, 460, 577
SfaNI	GCATC	4 cut(s)	94, 223, 389, 409
SfcI	CTRYAG	2 cut(s)	86, 261
SinI	GGWCC	2 cut(s)	184, 359
SmiMI	CAYNNNNRTG	1 cut(s)	556
Sse9I	AATT	6 cut(s)	43, 255, 300, 313, 490, 529
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	4 cut(s)	372, 407, 450, 585
TaaI	ACNGT	2 cut(s)	7, 90
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	71
TasI	AATT	6 cut(s)	43, 255, 300, 313, 490, 529
TatI	WGTACW	2 cut(s)	474, 554
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	4 cut(s)	12, 95, 207, 433
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	4 cut(s)	12, 95, 207, 433
VpaK11BI	GGWCC	2 cut(s)	184, 359
XapI	RAATTY	2 cut(s)	313, 490
XceI	RCATGY	2 cut(s)	555, 561
XspI	CTAG	4 cut(s)	372, 407, 450, 585
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.