Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

66717962 .. 66721081

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTGCGATTCATTGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATCGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTTGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTATGTACAAGAGTTGTTCACCCAGTTTCAGGTGCTGGATGAATCTCTTTCTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

155

Amino Acids

18.05

Weight (kDa)

8.88

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	206, 385
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	301, 358
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	3 cut(s)	64, 188, 268
AluI	AGCT	3 cut(s)	64, 188, 268
Alw21I	GWGCWC	3 cut(s)	17, 190, 250
Alw26I	GTCTC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	284, 340
BaeGI	GKGCMC	2 cut(s)	250, 427
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	3 cut(s)	17, 190, 250
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	269, 285
BlpI	GCTNAGC	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	270, 286
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 358
Bse1I	ACTGG	3 cut(s)	137, 267, 352
Bse3DI	GCAATG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	373, 438
BseLI	CCNNNNNNNGG	2 cut(s)	301, 358
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	30, 153, 419
BseNI	ACTGG	3 cut(s)	137, 267, 352
BseRI	GAGGAG	2 cut(s)	40, 43
BseSI	GKGCMC	2 cut(s)	250, 427
BseXI	GCAGC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	3 cut(s)	17, 190, 250
BslI	CCNNNNNNNGG	2 cut(s)	301, 358
BsmAI	GTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	4 cut(s)	17, 190, 250, 427
Bsp1407I	TGTACA	1 cut(s)	334
Bsp1720I	GCTNAGC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	29, 152, 420
BspDI	ATCGAT	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	137, 267, 352
BssECI	CCNNGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	4 cut(s)	16, 119, 139, 428
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	373, 438
BstMAI	GTCTC	1 cut(s)	117
BstSLI	GKGCMC	2 cut(s)	250, 427
BstV1I	GCAGC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	373, 438
BtsIMutI	CAGTG	2 cut(s)	147, 425
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	21, 115, 191
CviJI	RGCY	8 cut(s)	34, 64, 136, 167, 188, 268, 399, 459
CviKI_1	RGCY	8 cut(s)	34, 64, 136, 167, 188, 268, 399, 459
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	4 cut(s)	16, 119, 139, 428
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	206, 385
EcoICRI	GAGCTC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	3 cut(s)	24, 118, 194
FaiI	YATR	8 cut(s)	22, 83, 116, 192, 253, 333, 395, 466
FatI	CATG	3 cut(s)	20, 114, 190
Fnu4HI	GCNGC	2 cut(s)	269, 285
FokI	GGATG	2 cut(s)	380, 445
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	269, 285
GluI	GCNGC	2 cut(s)	269, 285
GsuI	CTGGAG	1 cut(s)	284
Hin1II	CATG	3 cut(s)	24, 118, 194
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	4 cut(s)	47, 200, 216, 371
HphI	GGTGA	2 cut(s)	284, 340
Hpy166II	GTNNAC	3 cut(s)	248, 327, 348
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	179, 239, 443
Hpy8I	GTNNAC	3 cut(s)	248, 327, 348
HpyAV	CCTTC	5 cut(s)	87, 167, 230, 269, 313
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	4, 88, 248
HpyF3I	CTNAG	4 cut(s)	16, 119, 139, 428
Hsp92II	CATG	3 cut(s)	24, 118, 194
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	195
MhlI	GDGCHC	4 cut(s)	17, 190, 250, 427
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	194, 210
MnlI	CCTC	4 cut(s)	18, 21, 24, 423
MseI	TTAA	1 cut(s)	60
NlaIII	CATG	3 cut(s)	24, 118, 194
PfeI	GAWTC	2 cut(s)	47, 371
PkrI	GCNGC	2 cut(s)	270, 286
PleI	GAGTC	2 cut(s)	194, 210
PpsI	GAGTC	2 cut(s)	194, 210
Psp124BI	GAGCTC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	269, 285
SchI	GAGTC	2 cut(s)	194, 210
SduI	GDGCHC	4 cut(s)	17, 190, 250, 427
SetI	ASST	8 cut(s)	66, 178, 190, 232, 270, 306, 324, 363
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	69, 93
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	47, 371
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	147, 432
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	39, 103, 332, 384
TspRI	CASTG	2 cut(s)	147, 432
VneI	GTGCAC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.