Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

11401617 .. 11402793

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCAATCTGCAAAGGATATCTCATTTTACCGAGAAGATTGCGACCTGCAAAGAAAGCCCACTGTATTTTGAAAACCGAGTTTCAGATTATCGAAATAGGGCGAAATAAGGCAAATCCTTGTAAGTATTGGCTGCCGGAAGGAAGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCAGTATGATTTAATCAGGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

115

Amino Acids

13.11

Weight (kDa)

9.14

Isoelectric Point (pI)

64.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	271
AfaI	GTAC	2 cut(s)	228, 255
AgsI	TTSAA	4 cut(s)	73, 212, 220, 233
Alw26I	GTCTC	2 cut(s)	178, 263
AlwI	GGATC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	133, 161
AspLEI	GCGC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	120, 148
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	178, 263
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	134, 162
BlsI	GCNGC	2 cut(s)	135, 163
BmcAI	AGTACT	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	120, 148
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	178, 263
Bsp143I	GATC	2 cut(s)	263, 274
BspCNI	CTCAG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	200
BssMI	GATC	2 cut(s)	263, 274
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	266, 277
BstMAI	GTCTC	2 cut(s)	178, 263
BstMBI	GATC	2 cut(s)	263, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 170
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	120, 148
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	227, 254
CviAII	CATG	2 cut(s)	188, 305
CviJI	RGCY	4 cut(s)	59, 133, 161, 313
CviKI_1	RGCY	4 cut(s)	59, 133, 161, 313
CviQI	GTAC	2 cut(s)	227, 254
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	265, 276
DpnII	GATC	2 cut(s)	263, 274
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	20
FaeI	CATG	2 cut(s)	191, 308
FaiI	YATR	5 cut(s)	189, 224, 285, 306, 325
FatI	CATG	2 cut(s)	187, 304
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	134, 162
Fsp4HI	GCNGC	2 cut(s)	134, 162
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	134, 162
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	191, 308
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	87, 240, 268
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	134, 138
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	12, 50, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 170
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	191, 308
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	263, 274
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	60, 142, 150, 280, 327
Lsp1109I	GCAGC	2 cut(s)	120, 148
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	265, 276
MboI	GATC	2 cut(s)	263, 274
MboII	GAAGA	4 cut(s)	48, 193, 224, 259
MfeI	CAATTG	1 cut(s)	207
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	191
MseI	TTAA	2 cut(s)	290, 346
MslI	CAYNNNNRTG	2 cut(s)	192, 328
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	56, 170
NdeII	GATC	2 cut(s)	263, 274
NlaIII	CATG	2 cut(s)	191, 308
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	135, 163
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
RsaI	GTAC	2 cut(s)	228, 255
RsaNI	GTAC	2 cut(s)	227, 254
RseI	CAYNNNNRTG	2 cut(s)	192, 328
SaqAI	TTAA	2 cut(s)	290, 346
SatI	GCNGC	2 cut(s)	134, 162
Sau3AI	GATC	2 cut(s)	263, 274
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	147
SetI	ASST	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	192, 328
Sse9I	AATT	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	93, 179
TasI	AATT	1 cut(s)	207
TatI	WGTACW	2 cut(s)	226, 253
Tru1I	TTAA	2 cut(s)	290, 346
Tru9I	TTAA	2 cut(s)	290, 346
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	2 cut(s)	133, 161
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	68
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.