RchiOBHm_Chr5g0079831

NEDD8 ultimate buster

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
85635570 .. 85638049
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35420

Sequence Viewer

Length: 1284 bp
ATGTGTGTTTTGGCTGCTCCAACTGAGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGGAAATCAGAGTGGGAAGAGAGTACAAATGGGATCAGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGTTTGTTACTGGTGCCTTTTTGCAACTGATAGTTTCGTTCATATGAAATTTGCAAGTTACTTGGCTTGTCCATGCTTGTTACAGCAGCTCCTGTCTCCTAAACTCTGTGGTTTGTATTTTCTTCCTTTTTTTCATTCTTGTAGGAGGCTTTCTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGAATTCACCTTGAGAAAGCCAGAGAGGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAGTGACGGTGTTGACTTCTGCACAAGAGAAGTTCACCCAGCTTCAGGTGGTGGATGAATCTCTCTTTCTTGTGATGATCATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGGGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATACTTGCTGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACCAATTCTTCCATACAGCATCTTGAATCAAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAATCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCAACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATGGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAGTGCTTGATAATCAAAATGGTCAAGTTGGAGGTTTTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAAGGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTAATAGAAAAGGTGAAGTCATAAGTGAGTACTTGGCTTAG

Protein Analysis

427

Amino Acids

47.28

Weight (kDa)

5.23

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 243, 997
AccI GTMKAC 1 cut(s) 768
AciI CCGC 2 cut(s) 133, 587
AclWI GGATC 2 cut(s) 124, 388
AcsI RAATTY 3 cut(s) 278, 453, 1093
AcuI CTGAAG 6 cut(s) 509, 644, 688, 800, 873, 1218
AfaI GTAC 4 cut(s) 81, 108, 906, 1274
AfiI CCNNNNNNNGG 2 cut(s) 661, 1030
AgsI TTSAA 7 cut(s) 65, 73, 485, 848, 896, 1146, 1241
AluBI AGCT 8 cut(s) 28, 319, 411, 491, 571, 658, 899, 941
AluI AGCT 8 cut(s) 28, 319, 411, 491, 571, 658, 899, 941
Alw21I GWGCWC 3 cut(s) 219, 493, 553
Alw26I GTCTC 3 cut(s) 31, 116, 330
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 2 cut(s) 124, 388
AlwNI CAGNNNCTG 3 cut(s) 125, 322, 1016
Ama87I CYCGRG 1 cut(s) 988
AoxI GGCC 1 cut(s) 912
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 5 cut(s) 14, 316, 571, 775, 1016
ApoI RAATTY 3 cut(s) 278, 453, 1093
AspS9I GGNCC 1 cut(s) 964
AsuHPI GGTGA 3 cut(s) 449, 643, 1268
AvaI CYCGRG 1 cut(s) 988
AvaII GGWCC 1 cut(s) 964
BaeGI GKGCMC 2 cut(s) 553, 730
BanI GGYRCC 2 cut(s) 243, 997
BanII GRGCYC 1 cut(s) 493
BarI GAAGNNNNNNTAC 2 cut(s) 888, 920
BauI CACGAG 1 cut(s) 510
Bbv12I GWGCWC 3 cut(s) 219, 493, 553
BbvI GCAGC 4 cut(s) 328, 558, 762, 1003
BccI CCATC 3 cut(s) 41, 405, 764
BclI TGATCA 2 cut(s) 127, 693
BcoDI GTCTC 3 cut(s) 31, 116, 330
BfaI CTAG 2 cut(s) 1152, 1205
BfmI CTRYAG 2 cut(s) 866, 1041
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 6 cut(s) 15, 317, 572, 588, 776, 1017
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 6 cut(s) 16, 318, 573, 589, 777, 1018
BmcAI AGTACT 2 cut(s) 81, 1274
Bme18I GGWCC 1 cut(s) 964
BmeT110I CYCGRG 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 2 cut(s) 245, 999
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 6 cut(s) 193, 850, 874, 1003, 1169, 1207
BmuI ACTGGG 1 cut(s) 740
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 661, 1030
Bse1I ACTGG 3 cut(s) 245, 570, 735
Bse3DI GCAATG 3 cut(s) 53, 213, 1086
BseCI ATCGAT 1 cut(s) 440
BseGI GGATG 2 cut(s) 676, 741
BseLI CCNNNNNNNGG 2 cut(s) 661, 1030
BseMI GCAATG 3 cut(s) 53, 213, 1086
BseMII CTCAG 3 cut(s) 15, 232, 1020
BseNI ACTGG 3 cut(s) 245, 570, 735
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 2 cut(s) 553, 730
BseXI GCAGC 4 cut(s) 328, 558, 762, 1003
BseYI CCCAGC 1 cut(s) 654
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 1 cut(s) 914
BshNI GGYRCC 2 cut(s) 243, 997
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 3 cut(s) 219, 493, 553
BsiHKCI CYCGRG 1 cut(s) 988
BslFI GGGAC 2 cut(s) 970, 1005
BslI CCNNNNNNNGG 2 cut(s) 661, 1030
BsmAI GTCTC 3 cut(s) 31, 116, 330
BsmFI GGGAC 2 cut(s) 970, 1005
BsnI GGCC 1 cut(s) 914
BsoBI CYCGRG 1 cut(s) 988
Bsp1286I GDGCHC 4 cut(s) 219, 493, 553, 730
Bsp143I GATC 5 cut(s) 116, 127, 393, 693, 923
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 2 cut(s) 133, 587
BspANI GGCC 1 cut(s) 914
BspCNI CTCAG 3 cut(s) 16, 231, 1021
BspDI ATCGAT 1 cut(s) 440
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 245, 999
BspMAI CTGCAG 1 cut(s) 1045
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 124, 388
BspT107I GGYRCC 2 cut(s) 243, 997
BsrDI GCAATG 3 cut(s) 53, 213, 1086
BsrI ACTGG 3 cut(s) 245, 570, 735
BssMI GATC 5 cut(s) 116, 127, 393, 693, 923
BssNAI GTATAC 1 cut(s) 769
BssSI CACGAG 1 cut(s) 510
Bst1107I GTATAC 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 510
Bst4CI ACNGT 4 cut(s) 599, 625, 802, 870
Bst6I CTCTTC 3 cut(s) 29, 95, 511
BstAPI GCANNNNNTGC 3 cut(s) 884, 1040, 1049
BstC8I GCNNGC 2 cut(s) 135, 549
BstDEI CTNAG 5 cut(s) 24, 218, 937, 1029, 1281
BstF5I GGATG 2 cut(s) 676, 741
BstKTI GATC 5 cut(s) 119, 130, 396, 696, 926
BstMAI GTCTC 3 cut(s) 31, 116, 330
BstMBI GATC 5 cut(s) 116, 127, 393, 693, 923
BstMWI GCNNNNNNNGC 5 cut(s) 781, 884, 938, 1040, 1049
BstNSI RCATGY 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 866, 1041
BstSLI GKGCMC 2 cut(s) 553, 730
BstV1I GCAGC 4 cut(s) 328, 558, 762, 1003
BstZ17I GTATAC 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 1 cut(s) 914
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 2 cut(s) 676, 741
BtsIMutI CAGTG 7 cut(s) 604, 624, 728, 807, 875, 1113, 1224
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 135, 549
CaiI CAGNNNCTG 3 cut(s) 125, 322, 1016
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 964
ClaI ATCGAT 1 cut(s) 440
CseI GACGC 1 cut(s) 1092
Csp6I GTAC 4 cut(s) 80, 107, 905, 1273
CviAII CATG 7 cut(s) 41, 142, 223, 303, 494, 697, 910
CviQI GTAC 4 cut(s) 80, 107, 905, 1273
DdeI CTNAG 5 cut(s) 24, 218, 937, 1029, 1281
DpnI GATC 5 cut(s) 118, 129, 395, 695, 925
DpnII GATC 5 cut(s) 116, 127, 393, 693, 923
Eam1104I CTCTTC 3 cut(s) 29, 95, 511
EarI CTCTTC 3 cut(s) 29, 95, 511
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 964
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 6 cut(s) 509, 644, 688, 800, 873, 1218
Eco88I CYCGRG 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 453
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 7 cut(s) 44, 145, 226, 306, 497, 700, 913
FaqI GGGAC 2 cut(s) 970, 1005
FatI CATG 7 cut(s) 40, 141, 222, 302, 493, 696, 909
FauI CCCGC 1 cut(s) 126
FauNDI CATATG 1 cut(s) 273
FbaI TGATCA 2 cut(s) 127, 693
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 6 cut(s) 15, 317, 572, 588, 776, 1017
FokI GGATG 2 cut(s) 683, 748
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 6 cut(s) 15, 317, 572, 588, 776, 1017
FspBI CTAG 2 cut(s) 1152, 1205
GluI GCNGC 6 cut(s) 15, 317, 572, 588, 776, 1017
GsaI CCCAGC 1 cut(s) 658
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 1 cut(s) 914
HgaI GACGC 1 cut(s) 1092
Hin1II CATG 7 cut(s) 44, 145, 226, 306, 497, 700, 913
HincII GTYRAC 2 cut(s) 630, 980
HindII GTYRAC 2 cut(s) 630, 980
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 5 cut(s) 503, 519, 674, 848, 1172
HphI GGTGA 3 cut(s) 449, 643, 1268
Hpy166II GTNNAC 6 cut(s) 551, 630, 651, 769, 863, 980
Hpy188I TCNGA 7 cut(s) 93, 121, 707, 1030, 1072, 1165, 1177
Hpy188III TCNNGA 6 cut(s) 142, 482, 542, 746, 845, 990
Hpy8I GTNNAC 6 cut(s) 551, 630, 651, 769, 863, 980
HpyAV CCTTC 4 cut(s) 434, 533, 572, 802
HpyCH4III ACNGT 4 cut(s) 599, 625, 802, 870
HpyCH4IV ACGT 1 cut(s) 1148
HpyF10VI GCNNNNNNNGC 5 cut(s) 781, 884, 938, 1040, 1049
HpyF3I CTNAG 5 cut(s) 24, 218, 937, 1029, 1281
HpySE526I ACGT 1 cut(s) 1148
Hsp92II CATG 7 cut(s) 44, 145, 226, 306, 497, 700, 913
Ksp22I TGATCA 2 cut(s) 127, 693
Kzo9I GATC 5 cut(s) 116, 127, 393, 693, 923
LmnI GCTCC 3 cut(s) 22, 324, 568
Lsp1109I GCAGC 4 cut(s) 328, 558, 762, 1003
LweI GCATC 6 cut(s) 193, 850, 874, 1003, 1169, 1207
MaeI CTAG 2 cut(s) 1152, 1205
MaeII ACGT 1 cut(s) 1148
MaeIII GTNAC 5 cut(s) 156, 236, 287, 309, 619
MalI GATC 5 cut(s) 118, 129, 395, 695, 925
MboI GATC 5 cut(s) 116, 127, 393, 693, 923
MboII GAAGA 7 cut(s) 46, 77, 112, 344, 498, 822, 1211
MfeI CAATTG 2 cut(s) 60, 1080
MhlI GDGCHC 4 cut(s) 219, 493, 553, 730
MluCI AATT 8 cut(s) 60, 193, 278, 453, 826, 1035, 1080, 1093
MlyI GAGTC 2 cut(s) 497, 513
MmeI TCCRAC 2 cut(s) 44, 1114
MnlI CCTC 8 cut(s) 220, 223, 369, 469, 784, 947, 1024, 1130
Mph1103I ATGCAT 1 cut(s) 1162
MseI TTAA 3 cut(s) 183, 407, 1245
MslI CAYNNNNRTG 2 cut(s) 45, 165
MspA1I CMGCKG 1 cut(s) 133
MunI CAATTG 2 cut(s) 60, 1080
MwoI GCNNNNNNNGC 5 cut(s) 781, 884, 938, 1040, 1049
NdeI CATATG 1 cut(s) 273
NdeII GATC 5 cut(s) 116, 127, 393, 693, 923
NlaIII CATG 7 cut(s) 44, 145, 226, 306, 497, 700, 913
NlaIV GGNNCC 2 cut(s) 245, 999
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 1 cut(s) 44
PagI TCATGA 1 cut(s) 141
PfeI GAWTC 3 cut(s) 674, 848, 1172
PkrI GCNGC 6 cut(s) 16, 318, 573, 589, 777, 1018
PleI GAGTC 2 cut(s) 497, 513
PpsI GAGTC 2 cut(s) 497, 513
Psp124BI GAGCTC 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 245, 999
PspPI GGNCC 1 cut(s) 964
PstI CTGCAG 1 cut(s) 1045
PstNI CAGNNNCTG 3 cut(s) 125, 322, 1016
RsaI GTAC 4 cut(s) 81, 108, 906, 1274
RsaNI GTAC 4 cut(s) 80, 107, 905, 1273
RseI CAYNNNNRTG 2 cut(s) 45, 165
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 3 cut(s) 183, 407, 1245
SatI GCNGC 6 cut(s) 15, 317, 572, 588, 776, 1017
Sau3AI GATC 5 cut(s) 116, 127, 393, 693, 923
Sau96I GGNCC 1 cut(s) 964
ScaI AGTACT 2 cut(s) 81, 1274
SchI GAGTC 2 cut(s) 497, 513
SduI GDGCHC 4 cut(s) 219, 493, 553, 730
SfaNI GCATC 6 cut(s) 193, 850, 874, 1003, 1169, 1207
SfcI CTRYAG 2 cut(s) 866, 1041
SinI GGWCC 1 cut(s) 964
SmiMI CAYNNNNRTG 2 cut(s) 45, 165
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 8 cut(s) 60, 193, 278, 453, 826, 1035, 1080, 1093
SsiI CCGC 2 cut(s) 133, 587
SspMI CTAG 2 cut(s) 1152, 1205
SstI GAGCTC 1 cut(s) 493
TaaI ACNGT 4 cut(s) 599, 625, 802, 870
TaiI ACGT 1 cut(s) 1151
TaqI TCGA 3 cut(s) 32, 416, 440
TasI AATT 8 cut(s) 60, 193, 278, 453, 826, 1035, 1080, 1093
TatI WGTACW 3 cut(s) 79, 106, 1272
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 3 cut(s) 674, 848, 1172
Tru1I TTAA 3 cut(s) 183, 407, 1245
Tru9I TTAA 3 cut(s) 183, 407, 1245
TscAI CASTG 7 cut(s) 604, 624, 735, 807, 875, 1113, 1231
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 5 cut(s) 14, 316, 571, 775, 1016
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 5 cut(s) 42, 260, 290, 353, 687
TspRI CASTG 7 cut(s) 604, 624, 735, 807, 875, 1113, 1231
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 964
XapI RAATTY 3 cut(s) 278, 453, 1093
XceI RCATGY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 2 cut(s) 1152, 1205
ZrmI AGTACT 2 cut(s) 81, 1274
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.