Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

94826 .. 95236

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtttgtgaggccaaatcgtgctcactctgatgtttacaactttgtgttcaacagtcttagctttgcagggtggagggacaatggaccaagcaatctgtcaactgctctcgggacatcaccaaaccccacagatgctgctgaccaatctgaggcaattcctgcagtcaatgctaacaacaatagtcaatctgatgttgcaattgacattgcaaattctcttgcgtcaatgcttgataatcaaaatggtcaagttggaggtccttcaacgcctagtattgcatcagagcgtgaacttgctgaagaactagcacaaggagatgctttcactgactacgatattgaagataccagaaaaggtgaagtcataagtgagaacttggctctactgaattcagcgggaacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

136

Amino Acids

14.36

Weight (kDa)

4.09

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	214, 391
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	52, 267, 344
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	214, 391
AspS9I	GGNCC	2 cut(s)	86, 260
AsuHPI	GGTGA	2 cut(s)	111, 371
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	86, 260
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	273, 308
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	86, 260
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	86, 260
BmsI	GCATC	3 cut(s)	124, 290, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	92, 127
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	92, 127
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	161, 170
BstDEI	CTNAG	2 cut(s)	59, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	86, 260
CseI	GACGC	1 cut(s)	213
CviJI	RGCY	3 cut(s)	13, 63, 383
CviKI_1	RGCY	3 cut(s)	13, 63, 383
DdeI	CTNAG	2 cut(s)	59, 150
Eco47I	GGWCC	2 cut(s)	86, 260
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	391
FaiI	YATR	1 cut(s)	368
FaqI	GGGAC	2 cut(s)	92, 127
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	2 cut(s)	273, 308
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	13
HgaI	GACGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HphI	GGTGA	2 cut(s)	111, 371
Hpy166II	GTNNAC	3 cut(s)	37, 102, 293
Hpy188I	TCNGA	4 cut(s)	31, 151, 193, 286
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	37, 102, 293
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	5 cut(s)	68, 164, 200, 212, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpyF3I	CTNAG	2 cut(s)	59, 150
LpnPI	CCDG	3 cut(s)	54, 174, 364
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	124, 290, 310
MaeI	CTAG	2 cut(s)	273, 308
MboII	GAAGA	2 cut(s)	314, 356
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	156, 201, 214, 391
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	3, 69, 145, 251
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
PkrI	GCNGC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
PspPI	GGNCC	2 cut(s)	86, 260
PspPPI	RGGWCCY	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	86, 260
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	3 cut(s)	65, 262, 361
SfaNI	GCATC	3 cut(s)	124, 290, 310
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	86, 260
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	156, 201, 214, 391
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	273, 308
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	4 cut(s)	156, 201, 214, 391
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	86, 260
XapI	RAATTY	2 cut(s)	214, 391
XspI	CTAG	2 cut(s)	273, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.