Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

169524 .. 171644

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgctgatggttcattgccaattgaagatttcagtacttggaaatcagagtgagaagaaagtacaaatgggatcagagactgatcagcggtctacttactttgttgattctcattatagatatttgatactggagctgctggaaggggtggcggcgtatcacagtggtcaggttgataagtcaatgacggtgttgacttctgcacaagagaagttcacccggagcttgctgctgaagcactatgaggaaatgacagtggagaaggcattggatttgaccaattcttccatacagcagcatcttgaatcaaggaaaagtaaactacagtgccaagcagtagatgcttcagttgaagcttttgtacgcatggcctttgacagatcattagcagtcttagctttgcagggtggagggacaatggaccaagcaatctgtccactgctctcgggacaggcaccaaaccccacagatgctgctaaccaatctgaggcaattcctgcagtcaatgctaacaacaatggtcaatctgatgttgcaattgacattgcaaattctcttgcgtcagtgcttgataatcaaaatggtcaagttggaggtttttcaacgtctagtaatgcatcagagcgtgattcagaaagggaaagccaacttgctgaagaactagcacaaggagatgctttcactgactatgatattgaagttaatagacaaggtgaagtcataagtgagtacttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

246

Amino Acids

26.8

Weight (kDa)

4.6

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	88, 152
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	3 cut(s)	254, 330, 675
AfaI	GTAC	4 cut(s)	36, 63, 363, 731
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	5 cut(s)	25, 305, 353, 603, 698
AluBI	AGCT	4 cut(s)	136, 225, 356, 398
AluI	AGCT	4 cut(s)	136, 225, 356, 398
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	2 cut(s)	80, 473
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	4 cut(s)	136, 229, 295, 473
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	208, 725
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbvI	GCAGC	4 cut(s)	123, 216, 307, 460
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	609, 662
BfmI	CTRYAG	2 cut(s)	323, 498
BisI	GCNGC	5 cut(s)	137, 153, 230, 296, 474
BlsI	GCNGC	5 cut(s)	138, 154, 231, 297, 475
BmcAI	AGTACT	2 cut(s)	36, 731
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	5 cut(s)	307, 331, 460, 626, 664
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	2 cut(s)	13, 543
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	2 cut(s)	13, 543
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	4 cut(s)	123, 216, 307, 460
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	427, 462
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	427, 462
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	71, 82, 380
BspACI	CCGC	2 cut(s)	88, 152
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	13, 543
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	71, 82, 380
Bst4CI	ACNGT	4 cut(s)	164, 190, 256, 327
BstAPI	GCANNNNNTGC	3 cut(s)	341, 497, 506
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	394, 486, 738
BstKTI	GATC	3 cut(s)	74, 85, 383
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	71, 82, 380
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 341, 395, 497, 506
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	323, 498
BstV1I	GCAGC	4 cut(s)	123, 216, 307, 460
BsuRI	GGCC	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	6 cut(s)	169, 261, 332, 437, 570, 681
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	2 cut(s)	80, 473
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	4 cut(s)	35, 62, 362, 730
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	7 cut(s)	136, 225, 356, 371, 398, 645, 737
CviKI_1	RGCY	7 cut(s)	136, 225, 356, 371, 398, 645, 737
CviQI	GTAC	4 cut(s)	35, 62, 362, 730
DdeI	CTNAG	3 cut(s)	394, 486, 738
DpnI	GATC	3 cut(s)	73, 84, 382
DpnII	GATC	3 cut(s)	71, 82, 380
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	3 cut(s)	254, 330, 675
Eco88I	CYCGRG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	619
FaeI	CATG	1 cut(s)	370
FaiI	YATR	6 cut(s)	117, 243, 290, 368, 690, 722
FaqI	GGGAC	2 cut(s)	427, 462
FatI	CATG	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	5 cut(s)	137, 153, 230, 296, 474
Fsp4HI	GCNGC	5 cut(s)	137, 153, 230, 296, 474
FspBI	CTAG	2 cut(s)	609, 662
GluI	GCNGC	5 cut(s)	137, 153, 230, 296, 474
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	549
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	3 cut(s)	107, 305, 629
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	208, 725
Hpy166II	GTNNAC	5 cut(s)	93, 195, 216, 320, 437
Hpy188I	TCNGA	6 cut(s)	48, 76, 487, 529, 622, 634
Hpy188III	TCNNGA	2 cut(s)	302, 447
Hpy8I	GTNNAC	5 cut(s)	93, 195, 216, 320, 437
HpyAV	CCTTC	2 cut(s)	137, 256
HpyCH4III	ACNGT	4 cut(s)	164, 190, 256, 327
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	6 cut(s)	203, 403, 500, 536, 548, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 341, 395, 497, 506
HpyF3I	CTNAG	3 cut(s)	394, 486, 738
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	71, 82, 380
LmnI	GCTCC	2 cut(s)	133, 222
LpnPI	CCDG	7 cut(s)	116, 125, 155, 233, 389, 437, 510
Lsp1109I	GCAGC	4 cut(s)	123, 216, 307, 460
LweI	GCATC	5 cut(s)	307, 331, 460, 626, 664
MaeI	CTAG	2 cut(s)	609, 662
MaeII	ACGT	1 cut(s)	605
MalI	GATC	3 cut(s)	73, 84, 382
MboI	GATC	3 cut(s)	71, 82, 380
MboII	GAAGA	4 cut(s)	37, 67, 276, 668
MfeI	CAATTG	2 cut(s)	20, 537
MluCI	AATT	5 cut(s)	20, 280, 492, 537, 550
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	4 cut(s)	238, 404, 481, 587
Mph1103I	ATGCAT	1 cut(s)	619
MseI	TTAA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	2 cut(s)	20, 537
MwoI	GCNNNNNNNGC	5 cut(s)	235, 341, 395, 497, 506
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	71, 82, 380
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	107, 305, 629
PkrI	GCNGC	5 cut(s)	138, 154, 231, 297, 475
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	2 cut(s)	80, 473
RsaI	GTAC	4 cut(s)	36, 63, 363, 731
RsaNI	GTAC	4 cut(s)	35, 62, 362, 730
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	5 cut(s)	137, 153, 230, 296, 474
Sau3AI	GATC	3 cut(s)	71, 82, 380
Sau96I	GGNCC	1 cut(s)	421
ScaI	AGTACT	2 cut(s)	36, 731
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	8 cut(s)	138, 174, 227, 358, 400, 598, 608, 715
SfaNI	GCATC	5 cut(s)	307, 331, 460, 626, 664
SfcI	CTRYAG	2 cut(s)	323, 498
SinI	GGWCC	1 cut(s)	421
Sse9I	AATT	5 cut(s)	20, 280, 492, 537, 550
SsiI	CCGC	2 cut(s)	88, 152
SspMI	CTAG	2 cut(s)	609, 662
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	4 cut(s)	164, 190, 256, 327
TaiI	ACGT	1 cut(s)	608
TasI	AATT	5 cut(s)	20, 280, 492, 537, 550
TatI	WGTACW	3 cut(s)	34, 61, 729
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	107, 305, 629
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	6 cut(s)	169, 261, 332, 444, 570, 688
TseI	GCWGC	4 cut(s)	136, 229, 295, 473
TspRI	CASTG	6 cut(s)	169, 261, 332, 444, 570, 688
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	609, 662
ZrmI	AGTACT	2 cut(s)	36, 731
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.