RLG00000012856

NEDD8 ultimate buster

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
23220581 .. 23223881
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012856

Sequence Viewer

Length: 1101 bp
ATGCAAAATTTTGACTTGCAGCTTGAATGTGATCCCAGAAAGGCCTTGTCTGCAATGAACCAACTACATTGTAGACCAACAGATGCCGTGAAGACTTGCGAAGGAGTAGACTCAGGTTTTGTGACCAGTTTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATACTACTTGGAAATCAGAGTGGGAAGAAAGTACAAATGGGATCAAAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGACTCCTTCAGGCAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGACGGTGTTGACATCTGCACAAGAGAAGTTCACCCAGGTGCTGGATGAATTTTTGGTTGTGGATTCCAGCTTCAGGAGCTTGCTGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACCAATTCTTCCATACAGCAGCATCTTGAATCAAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCAACTGCTCTCGGGACAGGCACCAAACCCCATAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATGGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTTAGTGCTTGATAATCAAAATGGTCAAGTTGGAGGTTTTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAAGGGAAAGCCAACTTCCTGAAGAACTAGCACAAGGAGAAGCTTTCACTGACTATGATATTGAAGTTAATAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTTAG

Protein Analysis

367

Amino Acids

39.93

Weight (kDa)

4.57

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 814
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 2 cut(s) 73, 108
AciI CCGC 2 cut(s) 256, 473
AclWI GGATC 3 cut(s) 26, 247, 368
AcsI RAATTY 3 cut(s) 7, 554, 910
AcuI CTGAAG 5 cut(s) 417, 562, 614, 690, 1035
AfaI GTAC 3 cut(s) 231, 723, 1091
AfiI CCNNNNNNNGG 4 cut(s) 132, 547, 579, 847
AgsI TTSAA 7 cut(s) 26, 188, 196, 665, 713, 963, 1058
AjnI CCWGG 1 cut(s) 540
AleI CACNNNNGTG 1 cut(s) 542
AluBI AGCT 8 cut(s) 22, 391, 457, 576, 585, 716, 758, 1037
AluI AGCT 8 cut(s) 22, 391, 457, 576, 585, 716, 758, 1037
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 3 cut(s) 26, 247, 368
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 2 cut(s) 42, 729
ApeKI GCWGC 6 cut(s) 19, 137, 457, 589, 655, 833
ApoI RAATTY 3 cut(s) 7, 554, 910
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 781
AsuHPI GGTGA 2 cut(s) 529, 1085
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 1 cut(s) 781
BanI GGYRCC 1 cut(s) 814
BarI GAAGNNNNNNTAC 2 cut(s) 705, 737
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 6 cut(s) 31, 124, 444, 576, 667, 820
BccI CCATC 2 cut(s) 164, 385
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 542
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 969, 1022
BfmI CTRYAG 2 cut(s) 683, 858
BisI GCNGC 7 cut(s) 20, 138, 458, 474, 590, 656, 834
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 7 cut(s) 21, 139, 459, 475, 591, 657, 835
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 6 cut(s) 73, 316, 667, 691, 820, 986
BpiI GAAGAC 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 540
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 547, 579, 847
Bse1I ACTGG 2 cut(s) 126, 456
Bse3DI GCAATG 4 cut(s) 60, 176, 336, 903
BseBI CCWGG 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 4 cut(s) 132, 547, 579, 847
BseMI GCAATG 4 cut(s) 60, 176, 336, 903
BseMII CTCAG 3 cut(s) 126, 355, 837
BseNI ACTGG 2 cut(s) 126, 456
BseRI GAGGAG 2 cut(s) 365, 368
BseXI GCAGC 6 cut(s) 31, 124, 444, 576, 667, 820
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 2 cut(s) 44, 731
BshNI GGYRCC 1 cut(s) 814
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 805
BslFI GGGAC 2 cut(s) 787, 822
BslI CCNNNNNNNGG 4 cut(s) 132, 547, 579, 847
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 2 cut(s) 787, 822
BsnI GGCC 2 cut(s) 44, 731
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 5 cut(s) 31, 239, 250, 373, 740
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 2 cut(s) 256, 473
BspANI GGCC 2 cut(s) 44, 731
BspCNI CTCAG 3 cut(s) 125, 354, 838
BspDI ATCGAT 1 cut(s) 420
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 816
BspMAI CTGCAG 1 cut(s) 862
BspPI GGATC 3 cut(s) 26, 247, 368
BspT107I GGYRCC 1 cut(s) 814
BsrDI GCAATG 4 cut(s) 60, 176, 336, 903
BsrI ACTGG 2 cut(s) 126, 456
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 5 cut(s) 31, 239, 250, 373, 740
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 485, 511, 616, 687
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 3 cut(s) 701, 857, 866
BstC8I GCNNGC 2 cut(s) 258, 587
BstDEI CTNAG 5 cut(s) 112, 341, 754, 846, 1098
BstF5I GGATG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 5 cut(s) 34, 242, 253, 376, 743
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 5 cut(s) 31, 239, 250, 373, 740
BstMWI GCNNNNNNNGC 8 cut(s) 50, 146, 582, 595, 701, 755, 857, 866
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 2 cut(s) 683, 858
BstV1I GCAGC 6 cut(s) 31, 124, 444, 576, 667, 820
BstV2I GAAGAC 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 44, 731
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 4 cut(s) 490, 621, 692, 1041
Cac8I GCNNGC 2 cut(s) 258, 587
CaiI CAGNNNCTG 1 cut(s) 547
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 781
ClaI ATCGAT 1 cut(s) 420
Csp6I GTAC 3 cut(s) 230, 722, 1090
CviAII CATG 4 cut(s) 164, 265, 346, 727
CviQI GTAC 3 cut(s) 230, 722, 1090
DdeI CTNAG 5 cut(s) 112, 341, 754, 846, 1098
DpnI GATC 5 cut(s) 33, 241, 252, 375, 742
DpnII GATC 5 cut(s) 31, 239, 250, 373, 740
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 781
Eco57I CTGAAG 5 cut(s) 417, 562, 614, 690, 1035
Eco88I CYCGRG 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 979
FaeI CATG 4 cut(s) 167, 268, 349, 730
FaqI GGGAC 2 cut(s) 787, 822
FatI CATG 4 cut(s) 163, 264, 345, 726
FauI CCCGC 1 cut(s) 249
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 2 cut(s) 73, 108
Fnu4HI GCNGC 7 cut(s) 20, 138, 458, 474, 590, 656, 834
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 7 cut(s) 20, 138, 458, 474, 590, 656, 834
FspBI CTAG 2 cut(s) 969, 1022
GlaI GCGC 1 cut(s) 150
GluI GCNGC 7 cut(s) 20, 138, 458, 474, 590, 656, 834
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 2 cut(s) 44, 731
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 167, 268, 349, 730
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 2 cut(s) 516, 797
HindII GTYRAC 2 cut(s) 516, 797
HindIII AAGCTT 2 cut(s) 714, 1035
HinfI GANTC 5 cut(s) 110, 427, 569, 665, 989
HphI GGTGA 2 cut(s) 529, 1085
Hpy166II GTNNAC 6 cut(s) 74, 109, 516, 537, 680, 797
Hpy188I TCNGA 5 cut(s) 216, 847, 889, 982, 994
Hpy188III TCNNGA 5 cut(s) 265, 580, 662, 807, 1013
Hpy8I GTNNAC 6 cut(s) 74, 109, 516, 537, 680, 797
HpyAV CCTTC 5 cut(s) 95, 414, 441, 458, 616
HpyCH4III ACNGT 4 cut(s) 485, 511, 616, 687
HpyCH4IV ACGT 1 cut(s) 965
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 146, 582, 595, 701, 755, 857, 866
HpyF3I CTNAG 5 cut(s) 112, 341, 754, 846, 1098
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 4 cut(s) 167, 268, 349, 730
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 5 cut(s) 31, 239, 250, 373, 740
LmnI GCTCC 3 cut(s) 145, 454, 582
Lsp1109I GCAGC 6 cut(s) 31, 124, 444, 576, 667, 820
LweI GCATC 6 cut(s) 73, 316, 667, 691, 820, 986
MaeI CTAG 2 cut(s) 969, 1022
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 2 cut(s) 121, 279
MalI GATC 5 cut(s) 33, 241, 252, 375, 742
MboI GATC 5 cut(s) 31, 239, 250, 373, 740
MboII GAAGA 6 cut(s) 103, 169, 200, 235, 636, 1028
MfeI CAATTG 2 cut(s) 183, 897
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 8 cut(s) 7, 183, 316, 554, 640, 852, 897, 910
MlyI GAGTC 2 cut(s) 104, 421
MmeI TCCRAC 2 cut(s) 167, 931
MnlI CCTC 7 cut(s) 343, 346, 349, 598, 764, 841, 947
Mph1103I ATGCAT 1 cut(s) 979
MseI TTAA 3 cut(s) 306, 387, 1062
MslI CAYNNNNRTG 3 cut(s) 168, 288, 542
MspA1I CMGCKG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 2 cut(s) 183, 897
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 8 cut(s) 50, 146, 582, 595, 701, 755, 857, 866
NdeII GATC 5 cut(s) 31, 239, 250, 373, 740
NlaIII CATG 4 cut(s) 167, 268, 349, 730
NlaIV GGNNCC 1 cut(s) 816
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 979
NspI RCATGY 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 542
PagI TCATGA 1 cut(s) 264
PceI AGGCCT 1 cut(s) 44
PfeI GAWTC 3 cut(s) 569, 665, 989
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 7 cut(s) 21, 139, 459, 475, 591, 657, 835
PleI GAGTC 2 cut(s) 104, 421
PpsI GAGTC 2 cut(s) 104, 421
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 816
PspPI GGNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 1 cut(s) 547
RsaI GTAC 3 cut(s) 231, 723, 1091
RsaNI GTAC 3 cut(s) 230, 722, 1090
RseI CAYNNNNRTG 3 cut(s) 168, 288, 542
SaqAI TTAA 3 cut(s) 306, 387, 1062
SatI GCNGC 7 cut(s) 20, 138, 458, 474, 590, 656, 834
Sau3AI GATC 5 cut(s) 31, 239, 250, 373, 740
Sau96I GGNCC 1 cut(s) 781
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 2 cut(s) 104, 421
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 6 cut(s) 73, 316, 667, 691, 820, 986
SfcI CTRYAG 2 cut(s) 683, 858
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 3 cut(s) 168, 288, 542
Sse9I AATT 8 cut(s) 7, 183, 316, 554, 640, 852, 897, 910
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 256, 473
SspMI CTAG 2 cut(s) 969, 1022
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 540
TaaI ACNGT 4 cut(s) 485, 511, 616, 687
TaiI ACGT 1 cut(s) 968
TaqI TCGA 3 cut(s) 155, 396, 420
TasI AATT 8 cut(s) 7, 183, 316, 554, 640, 852, 897, 910
TatI WGTACW 2 cut(s) 229, 1089
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 3 cut(s) 569, 665, 989
Tru1I TTAA 3 cut(s) 306, 387, 1062
Tru9I TTAA 3 cut(s) 306, 387, 1062
TscAI CASTG 4 cut(s) 490, 621, 692, 1048
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 6 cut(s) 19, 137, 457, 589, 655, 833
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 71, 165, 567
TspRI CASTG 4 cut(s) 490, 621, 692, 1048
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 3 cut(s) 7, 554, 910
XceI RCATGY 1 cut(s) 167
XmiI GTMKAC 2 cut(s) 73, 108
XspI CTAG 2 cut(s) 969, 1022
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.