Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

69106315 .. 69107221

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG496700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCAGAGTGGGAAGAAAGTACAAATGGGATTGGAGACTGATCAGCGTCATGATCGGCCCGATGCTTCATACTAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCATTGGAAGTGCTCAGCATGGGGGAGGTTCGAACTGGAGGCTTTTTCTCTCTGCGATCAAAAGTTATTGAGCTAGTCGACAATCCTTCTATACTGCAAATCGTTATGGTTTGGTGTTATTTCATGCTTAGAGTCATCAACTGTCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAAGACTACTTCAGGCAGATATTTGAGACTGGAGCTGCTGGAAGGGTGGTGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

139

Amino Acids

16.14

Weight (kDa)

10.14

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	3 cut(s)	187, 311, 370
AluI	AGCT	3 cut(s)	187, 311, 370
Alw21I	GWGCWC	2 cut(s)	129, 313
Alw26I	GTCTC	3 cut(s)	31, 263, 355
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	129, 313
BbvI	GCAGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	31, 263, 355
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	59
BmsI	GCATC	2 cut(s)	54, 103
BpmI	CTGGAG	2 cut(s)	171, 386
Bpu1102I	GCTNAGC	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	154, 369
BseMII	CTCAG	3 cut(s)	19, 142, 276
BseNI	ACTGG	2 cut(s)	154, 369
BseXI	GCAGC	1 cut(s)	357
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	129, 313
BsmAI	GTCTC	3 cut(s)	31, 263, 355
BsnI	GGCC	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	129, 313
Bsp143I	GATC	3 cut(s)	42, 54, 170
Bsp1720I	GCTNAGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	3 cut(s)	18, 141, 275
BspHI	TCATGA	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	154, 369
BssMI	GATC	3 cut(s)	42, 54, 170
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	257, 397
Bst6I	CTCTTC	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	5, 128, 242, 262
BstKTI	GATC	3 cut(s)	45, 57, 173
BstMAI	GTCTC	3 cut(s)	31, 263, 355
BstMBI	GATC	3 cut(s)	42, 54, 170
BstV1I	GCAGC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	270, 402
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	4 cut(s)	52, 133, 238, 314
CviJI	RGCY	6 cut(s)	60, 156, 187, 290, 311, 370
CviKI_1	RGCY	6 cut(s)	60, 156, 187, 290, 311, 370
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	4 cut(s)	5, 128, 242, 262
DpnI	GATC	3 cut(s)	44, 56, 172
DpnII	GATC	3 cut(s)	42, 54, 170
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	4 cut(s)	55, 136, 241, 317
FaiI	YATR	7 cut(s)	53, 72, 134, 206, 221, 239, 315
FatI	CATG	4 cut(s)	51, 132, 237, 313
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	371
GsuI	CTGGAG	2 cut(s)	171, 386
HaeIII	GGCC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	55, 136, 241, 317
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	246, 323
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	52, 302
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	210, 290, 371
HpyCH4III	ACNGT	2 cut(s)	257, 397
HpyCH4V	TGCA	3 cut(s)	80, 116, 211
HpyF3I	CTNAG	4 cut(s)	5, 128, 242, 262
Hsp92II	CATG	4 cut(s)	55, 136, 241, 317
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	42, 54, 170
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	135, 255, 304, 333, 350, 359, 388
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	2 cut(s)	54, 103
MaeI	CTAG	1 cut(s)	188
MalI	GATC	3 cut(s)	44, 56, 172
MboI	GATC	3 cut(s)	42, 54, 170
MboII	GAAGA	2 cut(s)	27, 318
MhlI	GDGCHC	2 cut(s)	129, 313
MluCI	AATT	2 cut(s)	103, 273
MlyI	GAGTC	2 cut(s)	255, 317
MnlI	CCTC	2 cut(s)	133, 146
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	2 cut(s)	93, 336
MslI	CAYNNNNRTG	1 cut(s)	75
NdeII	GATC	3 cut(s)	42, 54, 170
NlaIII	CATG	4 cut(s)	55, 136, 241, 317
NsiI	ATGCAT	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	145
PagI	TCATGA	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	2 cut(s)	254, 317
PpsI	GAGTC	2 cut(s)	254, 317
Psp124BI	GAGCTC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	93, 336
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	3 cut(s)	42, 54, 170
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	255, 317
SduI	GDGCHC	2 cut(s)	129, 313
SetI	ASST	6 cut(s)	144, 189, 301, 313, 372, 407
SfaNI	GCATC	2 cut(s)	54, 103
SfuI	TTCGAA	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	103, 273
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	257, 397
TaqI	TCGA	2 cut(s)	145, 192
TasI	AATT	2 cut(s)	103, 273
TatI	WGTACW	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	93, 336
Tru9I	TTAA	2 cut(s)	93, 336
TscAI	CASTG	2 cut(s)	270, 402
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	59, 226
TspRI	CASTG	2 cut(s)	270, 402
XapI	RAATTY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.