Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

11176746 .. 11177541

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTCGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTCTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACCGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

9.51

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	3 cut(s)	110, 245, 289
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	205, 262
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	3 cut(s)	92, 172, 259
AluI	AGCT	3 cut(s)	92, 172, 259
Alw21I	GWGCWC	2 cut(s)	94, 154
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	268
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	188, 244
BaeGI	GKGCMC	2 cut(s)	154, 331
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	94, 154
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	173, 189
BlsI	GCNGC	2 cut(s)	174, 190
BmiI	GGNNCC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	199, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 262
Bse1I	ACTGG	2 cut(s)	41, 171
BseDI	CCNNGG	2 cut(s)	199, 332
BseGI	GGATG	2 cut(s)	277, 342
BseLI	CCNNNNNNNGG	2 cut(s)	205, 262
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	41, 171
BseSI	GKGCMC	2 cut(s)	154, 331
BseXI	GCAGC	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	94, 154
BslI	CCNNNNNNNGG	2 cut(s)	205, 262
BsmAI	GTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	3 cut(s)	94, 154, 331
Bsp1407I	TGTACA	1 cut(s)	238
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	41, 171
BssECI	CCNNGG	2 cut(s)	199, 332
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	23, 43
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	277, 342
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstSLI	GKGCMC	2 cut(s)	154, 331
BstV1I	GCAGC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	277, 342
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	19, 95
CviJI	RGCY	7 cut(s)	40, 71, 92, 172, 259, 303, 363
CviKI_1	RGCY	7 cut(s)	40, 71, 92, 172, 259, 303, 363
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	23, 43
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	3 cut(s)	110, 245, 289
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	2 cut(s)	22, 98
FaiI	YATR	5 cut(s)	20, 96, 157, 299, 370
FatI	CATG	2 cut(s)	18, 94
Fnu4HI	GCNGC	2 cut(s)	173, 189
FokI	GGATG	2 cut(s)	284, 349
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	173, 189
GluI	GCNGC	2 cut(s)	173, 189
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	188
Hin1II	CATG	2 cut(s)	22, 98
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	3 cut(s)	104, 120, 275
HphI	GGTGA	2 cut(s)	188, 244
Hpy166II	GTNNAC	3 cut(s)	152, 231, 252
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	83, 143, 347
Hpy8I	GTNNAC	3 cut(s)	152, 231, 252
HpyAV	CCTTC	4 cut(s)	71, 134, 173, 217
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	23, 43
Hsp92II	CATG	2 cut(s)	22, 98
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	94, 154, 331
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	98, 114
MnlI	CCTC	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	22, 98
NlaIV	GGNNCC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	174, 190
PleI	GAGTC	2 cut(s)	98, 114
PpsI	GAGTC	2 cut(s)	98, 114
Psp124BI	GAGCTC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	94
SatI	GCNGC	2 cut(s)	173, 189
SchI	GAGTC	2 cut(s)	98, 114
SduI	GDGCHC	3 cut(s)	94, 154, 331
SetI	ASST	8 cut(s)	82, 94, 136, 174, 210, 228, 261, 267
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	200
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	7, 236, 288
TspRI	CASTG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.