Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

11177543 .. 11178358

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACAGTGGAGAAGGCATTCGATTTGACAAATCCACAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACACCACAGATGCAGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTAGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

174

Amino Acids

18.41

Weight (kDa)

4.11

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	310, 505
AcuI	CTGAAG	2 cut(s)	93, 435
AfaI	GTAC	2 cut(s)	126, 491
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	68, 116, 363, 458
AluBI	AGCT	4 cut(s)	119, 158, 236, 497
AluI	AGCT	4 cut(s)	119, 158, 236, 497
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	310, 505
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	181, 356
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	181, 356
BanI	GGYRCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvI	GCAGC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	369, 422, 465
BfmI	CTRYAG	2 cut(s)	86, 258
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	491
Bme18I	GGWCC	2 cut(s)	181, 356
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	181, 356
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	4 cut(s)	94, 220, 386, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	187, 222
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	187, 222
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	303
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	7, 90
BstAPI	GCANNNNNTGC	3 cut(s)	104, 257, 266
BstDEI	CTNAG	3 cut(s)	154, 246, 493
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 257, 266
BstSFI	CTRYAG	2 cut(s)	86, 258
BstV1I	GCAGC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	4 cut(s)	12, 95, 197, 441
Cfr13I	GGNCC	2 cut(s)	181, 356
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	125, 490
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	6 cut(s)	119, 134, 158, 236, 405, 497
CviKI_1	RGCY	6 cut(s)	119, 134, 158, 236, 405, 497
CviQI	GTAC	2 cut(s)	125, 490
DdeI	CTNAG	3 cut(s)	154, 246, 493
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	181, 356
Eco57I	CTGAAG	2 cut(s)	93, 435
Eco88I	CYCGRG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	505
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	1 cut(s)	133
FaiI	YATR	4 cut(s)	53, 131, 450, 482
FaqI	GGGAC	2 cut(s)	187, 222
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	369, 422, 465
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	2 cut(s)	68, 389
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	83, 197
Hpy188I	TCNGA	4 cut(s)	247, 289, 382, 394
Hpy188III	TCNNGA	2 cut(s)	65, 207
Hpy8I	GTNNAC	2 cut(s)	83, 197
HpyAV	CCTTC	2 cut(s)	7, 369
HpyCH4III	ACNGT	2 cut(s)	7, 90
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	6 cut(s)	163, 233, 260, 296, 308, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 257, 266
HpyF3I	CTNAG	3 cut(s)	154, 246, 493
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	149, 197, 270
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	4 cut(s)	94, 220, 386, 424
MaeI	CTAG	3 cut(s)	369, 422, 465
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	39, 428
MfeI	CAATTG	1 cut(s)	297
MluCI	AATT	5 cut(s)	43, 252, 297, 310, 505
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	66, 164, 241, 347
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	104, 257, 266
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	68, 389
PkrI	GCNGC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	181, 356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	126, 491
RsaNI	GTAC	2 cut(s)	125, 490
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	2 cut(s)	181, 356
ScaI	AGTACT	1 cut(s)	491
SetI	ASST	7 cut(s)	121, 160, 238, 358, 368, 475, 499
SfaNI	GCATC	4 cut(s)	94, 220, 386, 424
SfcI	CTRYAG	2 cut(s)	86, 258
SinI	GGWCC	2 cut(s)	181, 356
Sse9I	AATT	5 cut(s)	43, 252, 297, 310, 505
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	369, 422, 465
TaaI	ACNGT	2 cut(s)	7, 90
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	21, 71
TasI	AATT	5 cut(s)	43, 252, 297, 310, 505
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	68, 389
TscAI	CASTG	4 cut(s)	12, 95, 204, 448
TseI	GCWGC	1 cut(s)	233
TspRI	CASTG	4 cut(s)	12, 95, 204, 448
VpaK11BI	GGWCC	2 cut(s)	181, 356
XapI	RAATTY	2 cut(s)	310, 505
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	369, 422, 465
ZrmI	AGTACT	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.