Rw7G042590

NEDD8 ultimate buster

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
66229012 .. 66231587
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042590.1

Sequence Viewer

Length: 1386 bp
ATGAAAGAATTTAGCTTTATGAAAACTTTGGTTATGTTAGTTGGCTTGGTGGTAGAATCAGTTTCATTGCCTATGAGTATGTTTTTGTATGATTCTGGTGGCTGTTTATCTGATGAACACTCTATTCTGGGTTTAATAGTGGCTGCTCCAACTGTGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGTTTGTTACTGGAGGCTTTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTCCATGCTTAGAGACATCAACTGGTTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTCCTTGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGATGCCTCAAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTTGTACGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTATGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTCTCTTTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGAGGATGAGCAATCAAGATTCCATCAGCCCTGTATACTTGATGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCCGATGTTGCAATTGACATTGCAAATTCTCTTGGAGGTCCTTCAACGTCTAGTATTGCATCAGAGCGTGAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGAAAAGGTGAAGTCATAAGTGAGTATTTGGCTCTACTGAATTCAGCGGGAACAAAGTGA

Protein Analysis

461

Amino Acids

51.15

Weight (kDa)

5.02

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 560, 641
AccB1I GGYRCC 1 cut(s) 1126
AccI GTMKAC 1 cut(s) 882
AciI CCGC 3 cut(s) 262, 707, 1373
AclWI GGATC 2 cut(s) 253, 383
AcsI RAATTY 4 cut(s) 8, 492, 1222, 1366
AcuI CTGAAG 7 cut(s) 548, 629, 764, 805, 914, 1002, 1296
AfaI GTAC 5 cut(s) 210, 237, 630, 759, 1035
AfiI CCNNNNNNNGG 3 cut(s) 724, 781, 1159
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 9 cut(s) 194, 202, 215, 524, 601, 977, 1025, 1242, 1319
AluBI AGCT 8 cut(s) 15, 406, 530, 607, 691, 778, 1028, 1070
AluI AGCT 8 cut(s) 15, 406, 530, 607, 691, 778, 1028, 1070
Alw21I GWGCWC 4 cut(s) 348, 532, 609, 673
Alw26I GTCTC 4 cut(s) 160, 245, 459, 941
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 2 cut(s) 253, 383
AlwNI CAGNNNCTG 2 cut(s) 787, 1145
Ama87I CYCGRG 1 cut(s) 1117
AoxI GGCC 1 cut(s) 1041
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 3 cut(s) 143, 691, 1145
ApoI RAATTY 4 cut(s) 8, 492, 1222, 1366
AspS9I GGNCC 2 cut(s) 1093, 1235
AsuHPI GGTGA 3 cut(s) 707, 763, 1346
AvaI CYCGRG 1 cut(s) 1117
AvaII GGWCC 2 cut(s) 1093, 1235
BaeGI GKGCMC 2 cut(s) 673, 847
BanI GGYRCC 1 cut(s) 1126
BanII GRGCYC 2 cut(s) 532, 609
BarI GAAGNNNNNNTAC 2 cut(s) 1017, 1049
Bbv12I GWGCWC 4 cut(s) 348, 532, 609, 673
BbvI GCAGC 3 cut(s) 130, 678, 1132
BccI CCATC 3 cut(s) 170, 400, 878
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 4 cut(s) 160, 245, 459, 941
BfaI CTAG 3 cut(s) 1248, 1283, 1326
BfmI CTRYAG 2 cut(s) 995, 1170
BfuAI ACCTGC 2 cut(s) 560, 641
BisI GCNGC 4 cut(s) 144, 692, 708, 1146
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 4 cut(s) 145, 693, 709, 1147
BmcAI AGTACT 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 1093, 1235
BmeT110I CYCGRG 1 cut(s) 1117
BmgT120I GGNCC 2 cut(s) 1093, 1235
BmiI GGNNCC 1 cut(s) 1128
BmsI GCATC 7 cut(s) 322, 574, 879, 1003, 1132, 1265, 1285
BplI GAGNNNNNCTC 2 cut(s) 364, 396
BpmI CTGGAG 2 cut(s) 391, 707
Bpu1102I GCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 521
Bsa29I ATCGAT 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 1 cut(s) 718
Bsc4I CCNNNNNNNGG 3 cut(s) 724, 781, 1159
Bse1I ACTGG 3 cut(s) 374, 479, 690
Bse3DI GCAATG 4 cut(s) 65, 182, 342, 1215
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 796, 858
BseLI CCNNNNNNNGG 3 cut(s) 724, 781, 1159
BseMI GCAATG 4 cut(s) 65, 182, 342, 1215
BseMII CTCAG 4 cut(s) 361, 495, 839, 1149
BseNI ACTGG 3 cut(s) 374, 479, 690
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 2 cut(s) 673, 847
BseXI GCAGC 3 cut(s) 130, 678, 1132
BseYI CCCAGC 1 cut(s) 774
BshFI GGCC 1 cut(s) 1043
BshNI GGYRCC 1 cut(s) 1126
BshVI ATCGAT 1 cut(s) 435
BsiHKAI GWGCWC 4 cut(s) 348, 532, 609, 673
BsiHKCI CYCGRG 1 cut(s) 1117
BslFI GGGAC 2 cut(s) 1099, 1134
BslI CCNNNNNNNGG 3 cut(s) 724, 781, 1159
BsmAI GTCTC 4 cut(s) 160, 245, 459, 941
BsmFI GGGAC 2 cut(s) 1099, 1134
BsnI GGCC 1 cut(s) 1043
Bso31I GGTCTC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 1117
Bsp1286I GDGCHC 5 cut(s) 348, 532, 609, 673, 847
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 4 cut(s) 245, 256, 388, 1052
Bsp1720I GCTNAGC 1 cut(s) 347
BspACI CCGC 3 cut(s) 262, 707, 1373
BspANI GGCC 1 cut(s) 1043
BspCNI CTCAG 4 cut(s) 360, 494, 840, 1150
BspDI ATCGAT 1 cut(s) 435
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 1128
BspMAI CTGCAG 1 cut(s) 1174
BspMI ACCTGC 2 cut(s) 560, 641
BspPI GGATC 2 cut(s) 253, 383
BspT107I GGYRCC 1 cut(s) 1126
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 4 cut(s) 65, 182, 342, 1215
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 3 cut(s) 374, 479, 690
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 4 cut(s) 245, 256, 388, 1052
BssNAI GTATAC 1 cut(s) 883
Bst1107I GTATAC 1 cut(s) 883
Bst4CI ACNGT 4 cut(s) 154, 719, 916, 999
Bst6I CTCTTC 2 cut(s) 158, 627
BstAPI GCANNNNNTGC 3 cut(s) 1013, 1169, 1178
BstAUI TGTACA 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 264, 669
BstDEI CTNAG 6 cut(s) 347, 461, 481, 848, 1066, 1158
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 2 cut(s) 796, 858
BstKTI GATC 4 cut(s) 248, 259, 391, 1055
BstMAI GTCTC 4 cut(s) 160, 245, 459, 941
BstMBI GATC 4 cut(s) 245, 256, 388, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 784, 1013, 1067, 1169, 1178
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 2 cut(s) 995, 1170
BstSLI GKGCMC 2 cut(s) 673, 847
BstV1I GCAGC 3 cut(s) 130, 678, 1132
BstZ17I GTATAC 1 cut(s) 883
Bsu15I ATCGAT 1 cut(s) 435
BsuRI GGCC 1 cut(s) 1043
BsuTUI ATCGAT 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 2 cut(s) 796, 858
BtsI GCAGTG 1 cut(s) 1109
BtsIMutI CAGTG 6 cut(s) 489, 845, 921, 1004, 1109, 1302
BveI ACCTGC 2 cut(s) 560, 641
Cac8I GCNNGC 2 cut(s) 264, 669
CaiI CAGNNNCTG 2 cut(s) 787, 1145
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 1093, 1235
ClaI ATCGAT 1 cut(s) 435
Csp6I GTAC 5 cut(s) 209, 236, 629, 758, 1034
CviAII CATG 7 cut(s) 170, 271, 352, 457, 533, 610, 1039
CviQI GTAC 5 cut(s) 209, 236, 629, 758, 1034
DdeI CTNAG 6 cut(s) 347, 461, 481, 848, 1066, 1158
DpnI GATC 4 cut(s) 247, 258, 390, 1054
DpnII GATC 4 cut(s) 245, 256, 388, 1052
Eam1104I CTCTTC 2 cut(s) 158, 627
EarI CTCTTC 2 cut(s) 158, 627
Ecl136II GAGCTC 2 cut(s) 530, 607
Eco24I GRGCYC 2 cut(s) 532, 609
Eco31I GGTCTC 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 1093, 1235
Eco53kI GAGCTC 2 cut(s) 530, 607
Eco57I CTGAAG 7 cut(s) 548, 629, 764, 805, 914, 1002, 1296
Eco88I CYCGRG 1 cut(s) 1117
EcoICRI GAGCTC 2 cut(s) 530, 607
EcoO109I RGGNCCY 1 cut(s) 1235
EcoRI GAATTC 2 cut(s) 492, 1366
EcoT38I GRGCYC 2 cut(s) 532, 609
FaeI CATG 7 cut(s) 173, 274, 355, 460, 536, 613, 1042
FaqI GGGAC 2 cut(s) 1099, 1134
FatI CATG 7 cut(s) 169, 270, 351, 456, 532, 609, 1038
FauI CCCGC 2 cut(s) 255, 1366
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 4 cut(s) 144, 692, 708, 1146
FokI GGATG 2 cut(s) 803, 865
FriOI GRGCYC 2 cut(s) 532, 609
Fsp4HI GCNGC 4 cut(s) 144, 692, 708, 1146
FspBI CTAG 3 cut(s) 1248, 1283, 1326
GluI GCNGC 4 cut(s) 144, 692, 708, 1146
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 2 cut(s) 391, 707
HaeIII GGCC 1 cut(s) 1043
Hin1II CATG 7 cut(s) 173, 274, 355, 460, 536, 613, 1042
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 1 cut(s) 1026
HinfI GANTC 9 cut(s) 56, 92, 542, 558, 619, 639, 794, 866, 977
HphI GGTGA 3 cut(s) 707, 763, 1346
Hpy166II GTNNAC 7 cut(s) 671, 750, 771, 883, 992, 1109, 1268
Hpy188I TCNGA 7 cut(s) 112, 222, 250, 824, 1159, 1201, 1261
Hpy188III TCNNGA 9 cut(s) 271, 521, 581, 598, 662, 863, 944, 974, 1119
Hpy8I GTNNAC 7 cut(s) 671, 750, 771, 883, 992, 1109, 1268
HpyAV CCTTC 8 cut(s) 429, 509, 572, 653, 692, 736, 916, 1248
HpyCH4III ACNGT 4 cut(s) 154, 719, 916, 999
HpyCH4IV ACGT 2 cut(s) 631, 1244
HpyCH4V TGCA 9 cut(s) 299, 335, 430, 671, 1075, 1172, 1208, 1220, 1256
HpyF10VI GCNNNNNNNGC 5 cut(s) 784, 1013, 1067, 1169, 1178
HpyF3I CTNAG 6 cut(s) 347, 461, 481, 848, 1066, 1158
HpySE526I ACGT 2 cut(s) 631, 1244
Hsp92II CATG 7 cut(s) 173, 274, 355, 460, 536, 613, 1042
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 245, 256, 388, 1052
LmnI GCTCC 2 cut(s) 151, 688
Lsp1109I GCAGC 3 cut(s) 130, 678, 1132
LweI GCATC 7 cut(s) 322, 574, 879, 1003, 1132, 1265, 1285
MaeI CTAG 3 cut(s) 1248, 1283, 1326
MaeII ACGT 2 cut(s) 631, 1244
MaeIII GTNAC 3 cut(s) 285, 365, 1321
MalI GATC 4 cut(s) 247, 258, 390, 1054
MboI GATC 4 cut(s) 245, 256, 388, 1052
MboII GAAGA 6 cut(s) 175, 206, 241, 614, 948, 1289
MfeI CAATTG 2 cut(s) 189, 1209
MhlI GDGCHC 5 cut(s) 348, 532, 609, 673, 847
MluCI AATT 9 cut(s) 8, 189, 322, 492, 952, 1164, 1209, 1222, 1366
MlyI GAGTC 4 cut(s) 536, 552, 613, 633
MmeI TCCRAC 1 cut(s) 173
MseI TTAA 3 cut(s) 134, 312, 402
MslI CAYNNNNRTG 2 cut(s) 174, 294
MspA1I CMGCKG 2 cut(s) 262, 1373
MunI CAATTG 2 cut(s) 189, 1209
MwoI GCNNNNNNNGC 5 cut(s) 784, 1013, 1067, 1169, 1178
NdeII GATC 4 cut(s) 245, 256, 388, 1052
NlaIII CATG 7 cut(s) 173, 274, 355, 460, 536, 613, 1042
NlaIV GGNNCC 1 cut(s) 1128
NspI RCATGY 1 cut(s) 173
PagI TCATGA 1 cut(s) 270
PfeI GAWTC 5 cut(s) 56, 92, 794, 866, 977
PkrI GCNGC 4 cut(s) 145, 693, 709, 1147
PleI GAGTC 4 cut(s) 536, 552, 613, 633
PpsI GAGTC 4 cut(s) 536, 552, 613, 633
Ppu21I YACGTR 1 cut(s) 632
PpuMI RGGWCCY 1 cut(s) 1235
Psp124BI GAGCTC 2 cut(s) 532, 609
Psp5II RGGWCCY 1 cut(s) 1235
PspFI CCCAGC 1 cut(s) 774
PspN4I GGNNCC 1 cut(s) 1128
PspPI GGNCC 2 cut(s) 1093, 1235
PspPPI RGGWCCY 1 cut(s) 1235
PstI CTGCAG 1 cut(s) 1174
PstNI CAGNNNCTG 2 cut(s) 787, 1145
RsaI GTAC 5 cut(s) 210, 237, 630, 759, 1035
RsaNI GTAC 5 cut(s) 209, 236, 629, 758, 1034
RseI CAYNNNNRTG 2 cut(s) 174, 294
SacI GAGCTC 2 cut(s) 532, 609
SaqAI TTAA 3 cut(s) 134, 312, 402
SatI GCNGC 4 cut(s) 144, 692, 708, 1146
Sau3AI GATC 4 cut(s) 245, 256, 388, 1052
Sau96I GGNCC 2 cut(s) 1093, 1235
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 4 cut(s) 536, 552, 613, 633
SduI GDGCHC 5 cut(s) 348, 532, 609, 673, 847
SfaNI GCATC 7 cut(s) 322, 574, 879, 1003, 1132, 1265, 1285
SfcI CTRYAG 2 cut(s) 995, 1170
SinI GGWCC 2 cut(s) 1093, 1235
SmiMI CAYNNNNRTG 2 cut(s) 174, 294
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 9 cut(s) 8, 189, 322, 492, 952, 1164, 1209, 1222, 1366
SsiI CCGC 3 cut(s) 262, 707, 1373
SspMI CTAG 3 cut(s) 1248, 1283, 1326
SstI GAGCTC 2 cut(s) 532, 609
TaaI ACNGT 4 cut(s) 154, 719, 916, 999
TaiI ACGT 2 cut(s) 634, 1247
TaqI TCGA 4 cut(s) 161, 411, 435, 980
TasI AATT 9 cut(s) 8, 189, 322, 492, 952, 1164, 1209, 1222, 1366
TatI WGTACW 3 cut(s) 208, 235, 757
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 5 cut(s) 56, 92, 794, 866, 977
Tru1I TTAA 3 cut(s) 134, 312, 402
Tru9I TTAA 3 cut(s) 134, 312, 402
TscAI CASTG 6 cut(s) 489, 852, 921, 1004, 1116, 1309
TseI GCWGC 3 cut(s) 143, 691, 1145
TspDTI ATGAA 7 cut(s) 17, 35, 54, 129, 171, 755, 807
TspRI CASTG 6 cut(s) 489, 852, 921, 1004, 1116, 1309
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 2 cut(s) 1093, 1235
XapI RAATTY 4 cut(s) 8, 492, 1222, 1366
XceI RCATGY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 3 cut(s) 1248, 1283, 1326
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.