Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366475.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1049

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366475.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

atggcgaaagtaaagattgcagggacatgggcgggtgtgctggaggtcgaactggacaattggacggtgcccatgttgagagaagaggttgcaaagcgatccaactgcgagcccggctcgatcaacttgatatgcgccggccgagttttgaaggacggcgatggcagcgagaatttgacccaactgggtgttaagaacaacgcaaagattctggctagtcgggtttctgctcaggagggtaagtctttgggtcaggagctgatggccgaaagcgaacgcgctcagagactcgctcgagtcaaggctgctgcaactgcgctctccaagagacatgctgatggttcattgccaattgaagatttcaatatagtacttgaagatcagagtggaaagaaagtacaaatgggatcggagactgatcagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

142

Amino Acids

15.33

Weight (kDa)

6.61

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	279
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	93, 415
AcoI	YGGCCR	2 cut(s)	139, 264
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	2 cut(s)	372, 399
AgsI	TTSAA	4 cut(s)	151, 356, 364, 377
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	280, 322, 407
AlwI	GGATC	2 cut(s)	93, 415
AlwNI	CAGNNNCTG	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	2 cut(s)	139, 264
ApeKI	GCWGC	3 cut(s)	165, 305, 308
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	3 cut(s)	137, 281, 319
AsuC2I	CCSGG	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	177, 292, 295
BccI	CCATC	3 cut(s)	155, 256, 332
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	280, 322, 407
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	166, 306, 309
BlsI	GCNGC	3 cut(s)	167, 307, 310
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BplI	GAGNNNNNCTC	4 cut(s)	101, 133, 277, 309
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	57, 189
Bse3DI	GCAATG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	245, 296
BseNI	ACTGG	2 cut(s)	57, 189
BseSI	GKGCMC	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	177, 292, 295
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	141, 266
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	114, 138
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	3 cut(s)	280, 322, 407
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	141, 266
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	72, 114
Bsp143I	GATC	5 cut(s)	98, 120, 379, 407, 418
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	141, 266
BspCNI	CTCAG	2 cut(s)	244, 295
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	93, 415
BspT107I	GGYRCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	57, 189
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	5 cut(s)	98, 120, 379, 407, 418
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	110, 139
BstDEI	CTNAG	2 cut(s)	231, 282
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	3 cut(s)	137, 281, 319
BstKTI	GATC	5 cut(s)	101, 123, 382, 410, 421
BstMAI	GTCTC	3 cut(s)	280, 322, 407
BstMBI	GATC	5 cut(s)	98, 120, 379, 407, 418
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 165, 314
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	177, 292, 295
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	141, 266
BtgZI	GCGATG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	110, 139
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	3 cut(s)	137, 281, 319
Cfr10I	RCCGGY	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	371, 398
CviAII	CATG	3 cut(s)	27, 73, 332
CviJI	RGCY	7 cut(s)	112, 117, 141, 215, 259, 266, 305
CviKI_1	RGCY	7 cut(s)	112, 117, 141, 215, 259, 266, 305
CviQI	GTAC	2 cut(s)	371, 398
DdeI	CTNAG	2 cut(s)	231, 282
DpnI	GATC	5 cut(s)	100, 122, 381, 409, 420
DpnII	GATC	5 cut(s)	98, 120, 379, 407, 418
EaeI	YGGCCR	2 cut(s)	139, 264
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	30, 76, 335
FaiI	YATR	5 cut(s)	28, 74, 133, 333, 368
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	26, 72, 331
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	166, 306, 309
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	166, 306, 309
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	3 cut(s)	136, 280, 318
GluI	GCNGC	3 cut(s)	166, 306, 309
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	141, 266
HapII	CCGG	2 cut(s)	114, 138
HhaI	GCGC	3 cut(s)	137, 281, 319
Hin1II	CATG	3 cut(s)	30, 76, 335
Hin6I	GCGC	3 cut(s)	135, 279, 317
HinP1I	GCGC	3 cut(s)	135, 279, 317
HinfI	GANTC	3 cut(s)	208, 288, 297
HpaII	CCGG	2 cut(s)	114, 138
Hpy188I	TCNGA	3 cut(s)	285, 384, 412
Hpy188III	TCNNGA	2 cut(s)	233, 254
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	20, 92, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 165, 314
HpyF3I	CTNAG	2 cut(s)	231, 282
Hsp92II	CATG	3 cut(s)	30, 76, 335
HspAI	GCGC	3 cut(s)	135, 279, 317
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	98, 120, 379, 407, 418
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	6, 26, 38, 127, 151, 170, 197, 218, 239
Lsp1109I	GCAGC	3 cut(s)	177, 292, 295
MaeI	CTAG	1 cut(s)	216
MalI	GATC	5 cut(s)	100, 122, 381, 409, 420
MboI	GATC	5 cut(s)	98, 120, 379, 407, 418
MboII	GAAGA	3 cut(s)	95, 368, 389
MfeI	CAATTG	2 cut(s)	58, 351
MhlI	GDGCHC	2 cut(s)	72, 114
MluCI	AATT	3 cut(s)	58, 172, 351
MlyI	GAGTC	2 cut(s)	282, 306
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	37, 79, 229
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	114, 138
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	2 cut(s)	58, 351
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	114, 165, 314
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	98, 120, 379, 407, 418
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	30, 76, 335
NlaIV	GGNNCC	1 cut(s)	69
NmeAIII	GCCGAG	1 cut(s)	167
NspI	RCATGY	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	167, 307, 310
PleI	GAGTC	2 cut(s)	282, 305
PpsI	GAGTC	2 cut(s)	282, 305
PspN4I	GGNNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	372, 399
RsaNI	GTAC	2 cut(s)	371, 398
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	166, 306, 309
Sau3AI	GATC	5 cut(s)	98, 120, 379, 407, 418
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	2 cut(s)	282, 306
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	2 cut(s)	72, 114
SetI	ASST	3 cut(s)	48, 90, 261
Sfr274I	CTCGAG	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	58, 172, 351
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	48, 119, 295
TasI	AATT	3 cut(s)	58, 172, 351
TatI	WGTACW	2 cut(s)	370, 397
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	3 cut(s)	165, 305, 308
TspDTI	ATGAA	1 cut(s)	333
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	294
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.