Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

75419495 .. 75419936

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGCTTTGACAGATCATTAGCGGTCGAAGCTTTGCCGGGTGGAGGGACAATGGACCAAACAATCTGTCGACTGCTCTCGGGACAGGAACCAAACCCCACAAATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCGATGCTAACAACAATAGCCAATCTGACGTTGCAACTGACATTGCAAATTCTCTTGCTTCAATGCTTGATAATCAAAATGGTCAAGTCGGAGGTCCTTCAACGTCTAGTAATGCACCAGAGCGTGATGCAGAAATGGAAAGCCAACTTGCTGTAGAACTAGCACAAGGGGATGTTTCACTGACTATTACATTGAAGTTTCTAGAGAAGGTGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

119

Amino Acids

12.25

Weight (kDa)

4.05

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	44, 121
AgsI	TTSAA	3 cut(s)	198, 237, 331
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	184
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspS9I	GGNCC	2 cut(s)	55, 230
AsuC2I	CCSGG	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	55, 230
BbvI	GCAGC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	39
BfaI	CTAG	3 cut(s)	243, 296, 338
BfmI	CTRYAG	2 cut(s)	132, 288
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	55, 230
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	55, 230
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	130, 253
BpuMI	CCSGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 121
Bse3DI	GCAATG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	44, 121
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	61, 96
BslI	CCNNNNNNNGG	2 cut(s)	44, 121
BsmFI	GGGAC	2 cut(s)	61, 96
BsoBI	CYCGRG	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	177
BssMI	GATC	1 cut(s)	14
BstAPI	GCANNNNNTGC	2 cut(s)	131, 140
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 131, 140
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	132, 288
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	55, 230
CviJI	RGCY	5 cut(s)	6, 32, 156, 279, 352
CviKI_1	RGCY	5 cut(s)	6, 32, 156, 279, 352
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	55, 230
Eco88I	CYCGRG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	230
FaiI	YATR	1 cut(s)	355
FaqI	GGGAC	2 cut(s)	61, 96
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	243, 296, 338
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	30
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	121, 163, 227
Hpy188III	TCNNGA	2 cut(s)	81, 338
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	243, 337
HpyCH4IV	ACGT	2 cut(s)	165, 239
HpyCH4V	TGCA	5 cut(s)	134, 170, 182, 251, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 131, 140
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	165, 239
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	51, 71, 144, 267
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	130, 253
MaeI	CTAG	3 cut(s)	243, 296, 338
MaeII	ACGT	2 cut(s)	165, 239
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MluCI	AATT	2 cut(s)	126, 184
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	38, 115, 221
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	29, 131, 140
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	55, 230
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	2 cut(s)	55, 230
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	5 cut(s)	34, 168, 232, 242, 348
SfaNI	GCATC	2 cut(s)	130, 253
SfcI	CTRYAG	2 cut(s)	132, 288
SinI	GGWCC	2 cut(s)	55, 230
Sse9I	AATT	2 cut(s)	126, 184
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	243, 296, 338
StyD4I	CCNGG	1 cut(s)	37
TaiI	ACGT	2 cut(s)	168, 242
TaqI	TCGA	3 cut(s)	27, 70, 138
TasI	AATT	2 cut(s)	126, 184
TscAI	CASTG	1 cut(s)	321
TseI	GCWGC	1 cut(s)	107
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	55, 230
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	3 cut(s)	243, 296, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.