Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

42058510 .. 42061790

Gene Structure 3281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGACATATACAAAAAGCTGGACAAACTTCCAGGCTGAAGATGGTAAAAGACTTTGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGGAAATCAGAGTGGGAAGAAAGTACAATTGGGATCAGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTGTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATAGAGGGTCTTAAACAAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGGGCTGCTGAAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGACGGTGTTAACTTCTGCACAAGAGAAGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTCTTTCTTGTGATGATCATGGGCTTCAGAGAACGAGATACAAAAAGGGAACTGGGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATACTTGCTGCTGAATCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACCAATTCTTCCATACAGCAGCATCTTGAATCAAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCAACTGCTCTCGGGACAGGCACCAAACCCCACAGATTATGCTAACAACAATGGTCAATCTGCTGTTGCAATTGACGTTGCAAATTCTCTTGCGTCAGTGCGTGATAATCAAAATGGTCAAGTTGGAGGTTTTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAAGGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTAATAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

373

Amino Acids

41.17

Weight (kDa)

4.76

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	2 cut(s)	178, 479
AclWI	GGATC	2 cut(s)	169, 290
AcsI	RAATTY	1 cut(s)	931
AcuI	CTGAAG	6 cut(s)	57, 401, 536, 580, 768, 1056
AfaI	GTAC	4 cut(s)	126, 153, 801, 1112
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	6 cut(s)	110, 118, 743, 791, 984, 1079
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	6 cut(s)	18, 313, 383, 550, 794, 812
AluI	AGCT	6 cut(s)	18, 313, 383, 550, 794, 812
Alw21I	GWGCWC	2 cut(s)	264, 445
Alw26I	GTCTC	3 cut(s)	76, 161, 293
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	169, 290
AlwNI	CAGNNNCTG	2 cut(s)	170, 559
Ama87I	CYCGRG	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	4 cut(s)	59, 463, 667, 733
ApoI	RAATTY	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	835
AsuHPI	GGTGA	2 cut(s)	535, 1106
AvaI	CYCGRG	1 cut(s)	859
AvaII	GGWCC	1 cut(s)	835
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	868
BarI	GAAGNNNNNNTAC	2 cut(s)	783, 815
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	264, 445
BbvI	GCAGC	4 cut(s)	46, 450, 654, 745
BccI	CCATC	4 cut(s)	35, 86, 307, 656
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	2 cut(s)	172, 585
BcoDI	GTCTC	3 cut(s)	76, 161, 293
BfaI	CTAG	2 cut(s)	990, 1043
BfmI	CTRYAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	60, 464, 480, 668, 734
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	5 cut(s)	61, 465, 481, 669, 735
BmcAI	AGTACT	2 cut(s)	126, 1112
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	2 cut(s)	467, 632
BmsI	GCATC	5 cut(s)	238, 745, 769, 1007, 1045
BmuI	ACTGGG	2 cut(s)	467, 632
Bpu1102I	GCTNAGC	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	462, 627, 803
Bse3DI	GCAATG	2 cut(s)	98, 258
BseBI	CCWGG	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	2 cut(s)	568, 633
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	2 cut(s)	98, 258
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	3 cut(s)	462, 627, 803
BseRI	GAGGAG	2 cut(s)	287, 290
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	4 cut(s)	46, 450, 654, 745
BseYI	CCCAGC	1 cut(s)	546
BsgI	GTGCAG	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	868
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	264, 445
BsiHKCI	CYCGRG	1 cut(s)	859
BslFI	GGGAC	2 cut(s)	841, 876
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	3 cut(s)	76, 161, 293
BsmFI	GGGAC	2 cut(s)	841, 876
BsoBI	CYCGRG	1 cut(s)	859
Bsp1286I	GDGCHC	2 cut(s)	264, 445
Bsp143I	GATC	4 cut(s)	161, 172, 295, 585
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	2 cut(s)	178, 479
BspCNI	CTCAG	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	870
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	169, 290
BspT107I	GGYRCC	1 cut(s)	868
BsrDI	GCAATG	2 cut(s)	98, 258
BsrI	ACTGG	3 cut(s)	462, 627, 803
BssMI	GATC	4 cut(s)	161, 172, 295, 585
BssNAI	GTATAC	1 cut(s)	661
BssSI	CACGAG	1 cut(s)	402
Bst1107I	GTATAC	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	491, 517, 694, 765
Bst6I	CTCTTC	2 cut(s)	74, 403
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	180, 441
BstDEI	CTNAG	3 cut(s)	263, 808, 1119
BstF5I	GGATG	2 cut(s)	568, 633
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	164, 175, 298, 588
BstMAI	GTCTC	3 cut(s)	76, 161, 293
BstMBI	GATC	4 cut(s)	161, 172, 295, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 556, 779
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	761
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	46, 450, 654, 745
BstZ17I	GTATAC	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	568, 633
BtsIMutI	CAGTG	5 cut(s)	496, 699, 770, 951, 1062
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	180, 441
CaiI	CAGNNNCTG	2 cut(s)	170, 559
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	835
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	4 cut(s)	125, 152, 800, 1111
CviAII	CATG	5 cut(s)	86, 187, 268, 386, 589
CviQI	GTAC	4 cut(s)	125, 152, 800, 1111
DdeI	CTNAG	3 cut(s)	263, 808, 1119
DpnI	GATC	4 cut(s)	163, 174, 297, 587
DpnII	GATC	4 cut(s)	161, 172, 295, 585
Eam1104I	CTCTTC	2 cut(s)	74, 403
EarI	CTCTTC	2 cut(s)	74, 403
Eco47I	GGWCC	1 cut(s)	835
Eco57I	CTGAAG	6 cut(s)	57, 401, 536, 580, 768, 1056
Eco88I	CYCGRG	1 cut(s)	859
EcoRII	CCWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	1000
FaeI	CATG	5 cut(s)	89, 190, 271, 389, 592
FaqI	GGGAC	2 cut(s)	841, 876
FatI	CATG	5 cut(s)	85, 186, 267, 385, 588
FauI	CCCGC	1 cut(s)	171
FbaI	TGATCA	2 cut(s)	172, 585
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	5 cut(s)	60, 464, 480, 668, 734
FokI	GGATG	2 cut(s)	575, 640
Fsp4HI	GCNGC	5 cut(s)	60, 464, 480, 668, 734
FspBI	CTAG	2 cut(s)	990, 1043
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	60, 464, 480, 668, 734
GsaI	CCCAGC	1 cut(s)	550
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	5 cut(s)	89, 190, 271, 389, 592
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	522, 851
HindII	GTYRAC	2 cut(s)	522, 851
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	6 cut(s)	395, 411, 566, 673, 743, 1010
HpaI	GTTAAC	1 cut(s)	522
HphI	GGTGA	2 cut(s)	535, 1106
Hpy166II	GTNNAC	6 cut(s)	443, 522, 543, 661, 758, 851
Hpy188I	TCNGA	5 cut(s)	138, 166, 599, 1003, 1015
Hpy188III	TCNNGA	5 cut(s)	187, 434, 638, 740, 861
Hpy8I	GTNNAC	6 cut(s)	443, 522, 543, 661, 758, 851
HpyAV	CCTTC	3 cut(s)	336, 425, 694
HpyCH4III	ACNGT	4 cut(s)	491, 517, 694, 765
HpyCH4IV	ACGT	2 cut(s)	924, 986
HpyCH4V	TGCA	9 cut(s)	215, 251, 337, 443, 530, 817, 917, 929, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 556, 779
HpyF3I	CTNAG	3 cut(s)	263, 808, 1119
HpySE526I	ACGT	2 cut(s)	924, 986
Hsp92II	CATG	5 cut(s)	89, 190, 271, 389, 592
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	2 cut(s)	172, 585
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	161, 172, 295, 585
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	4 cut(s)	46, 450, 654, 745
LweI	GCATC	5 cut(s)	238, 745, 769, 1007, 1045
MaeI	CTAG	2 cut(s)	990, 1043
MaeII	ACGT	2 cut(s)	924, 986
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	4 cut(s)	163, 174, 297, 587
MboI	GATC	4 cut(s)	161, 172, 295, 585
MboII	GAAGA	7 cut(s)	50, 91, 122, 157, 390, 714, 1049
MfeI	CAATTG	3 cut(s)	105, 155, 918
MhlI	GDGCHC	2 cut(s)	264, 445
MluCI	AATT	6 cut(s)	105, 155, 238, 718, 918, 931
MlyI	GAGTC	2 cut(s)	389, 405
MmeI	TCCRAC	2 cut(s)	89, 952
MnlI	CCTC	7 cut(s)	265, 268, 271, 361, 676, 818, 968
Mph1103I	ATGCAT	1 cut(s)	1000
MseI	TTAA	5 cut(s)	228, 309, 375, 521, 1083
MslI	CAYNNNNRTG	2 cut(s)	90, 210
MspA1I	CMGCKG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	3 cut(s)	105, 155, 918
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	68, 556, 779
NdeII	GATC	4 cut(s)	161, 172, 295, 585
NlaIII	CATG	5 cut(s)	89, 190, 271, 389, 592
NlaIV	GGNNCC	1 cut(s)	870
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	89
PagI	TCATGA	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	566, 673, 743, 1010
PkrI	GCNGC	5 cut(s)	61, 465, 481, 669, 735
PleI	GAGTC	2 cut(s)	389, 405
PpsI	GAGTC	2 cut(s)	389, 405
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	1 cut(s)	835
PstNI	CAGNNNCTG	2 cut(s)	170, 559
RsaI	GTAC	4 cut(s)	126, 153, 801, 1112
RsaNI	GTAC	4 cut(s)	125, 152, 800, 1111
RseI	CAYNNNNRTG	2 cut(s)	90, 210
SaqAI	TTAA	5 cut(s)	228, 309, 375, 521, 1083
SatI	GCNGC	5 cut(s)	60, 464, 480, 668, 734
Sau3AI	GATC	4 cut(s)	161, 172, 295, 585
Sau96I	GGNCC	1 cut(s)	835
ScaI	AGTACT	2 cut(s)	126, 1112
SchI	GAGTC	2 cut(s)	389, 405
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	264, 445
SfaNI	GCATC	5 cut(s)	238, 745, 769, 1007, 1045
SfcI	CTRYAG	1 cut(s)	761
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	2 cut(s)	90, 210
Sse9I	AATT	6 cut(s)	105, 155, 238, 718, 918, 931
SsiI	CCGC	2 cut(s)	178, 479
SspMI	CTAG	2 cut(s)	990, 1043
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	491, 517, 694, 765
TaiI	ACGT	2 cut(s)	927, 989
TaqI	TCGA	3 cut(s)	77, 318, 342
TasI	AATT	6 cut(s)	105, 155, 238, 718, 918, 931
TatI	WGTACW	3 cut(s)	124, 151, 1110
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	4 cut(s)	566, 673, 743, 1010
Tru1I	TTAA	5 cut(s)	228, 309, 375, 521, 1083
Tru9I	TTAA	5 cut(s)	228, 309, 375, 521, 1083
TscAI	CASTG	5 cut(s)	496, 699, 770, 951, 1069
TseI	GCWGC	4 cut(s)	59, 463, 667, 733
TspDTI	ATGAA	3 cut(s)	87, 352, 579
TspRI	CASTG	5 cut(s)	496, 699, 770, 951, 1069
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	835
XapI	RAATTY	1 cut(s)	931
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	2 cut(s)	990, 1043
ZrmI	AGTACT	2 cut(s)	126, 1112
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.