NEDD8 ultimate buster
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 274, 414 |
| AcsI | RAATTY | 1 cut(s) | 8 |
| AfaI | GTAC | 2 cut(s) | 231, 258 |
| AgsI | TTSAA | 3 cut(s) | 215, 223, 236 |
| AluBI | AGCT | 1 cut(s) | 15 |
| AluI | AGCT | 1 cut(s) | 15 |
| Alw21I | GWGCWC | 1 cut(s) | 390 |
| Alw26I | GTCTC | 2 cut(s) | 181, 266 |
| AlwI | GGATC | 2 cut(s) | 274, 414 |
| ApeKI | GCWGC | 1 cut(s) | 164 |
| ApoI | RAATTY | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 390 |
| BbvI | GCAGC | 1 cut(s) | 151 |
| BccI | CCATC | 2 cut(s) | 191, 431 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BcoDI | GTCTC | 2 cut(s) | 181, 266 |
| BisI | GCNGC | 1 cut(s) | 165 |
| BlpI | GCTNAGC | 1 cut(s) | 389 |
| BlsI | GCNGC | 1 cut(s) | 166 |
| BmcAI | AGTACT | 1 cut(s) | 231 |
| BmsI | GCATC | 1 cut(s) | 364 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 395, 427 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 389 |
| Bse3DI | GCAATG | 3 cut(s) | 65, 203, 384 |
| BseMI | GCAATG | 3 cut(s) | 65, 203, 384 |
| BseMII | CTCAG | 1 cut(s) | 403 |
| BseRI | GAGGAG | 2 cut(s) | 413, 416 |
| BseXI | GCAGC | 1 cut(s) | 151 |
| BsiHKAI | GWGCWC | 1 cut(s) | 390 |
| BsmAI | GTCTC | 2 cut(s) | 181, 266 |
| Bsp1286I | GDGCHC | 1 cut(s) | 390 |
| Bsp143I | GATC | 3 cut(s) | 266, 277, 419 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 1 cut(s) | 402 |
| BspHI | TCATGA | 1 cut(s) | 312 |
| BspPI | GGATC | 2 cut(s) | 274, 414 |
| BsrDI | GCAATG | 3 cut(s) | 65, 203, 384 |
| BssMI | GATC | 3 cut(s) | 266, 277, 419 |
| Bst6I | CTCTTC | 1 cut(s) | 179 |
| BstDEI | CTNAG | 1 cut(s) | 389 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstKTI | GATC | 3 cut(s) | 269, 280, 422 |
| BstMAI | GTCTC | 2 cut(s) | 181, 266 |
| BstMBI | GATC | 3 cut(s) | 266, 277, 419 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 173 |
| BstNSI | RCATGY | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 151 |
| CciI | TCATGA | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 178 |
| Csp6I | GTAC | 2 cut(s) | 230, 257 |
| CviAII | CATG | 3 cut(s) | 191, 313, 394 |
| CviJI | RGCY | 6 cut(s) | 15, 45, 102, 164, 321, 407 |
| CviKI_1 | RGCY | 6 cut(s) | 15, 45, 102, 164, 321, 407 |
| CviQI | GTAC | 2 cut(s) | 230, 257 |
| DdeI | CTNAG | 1 cut(s) | 389 |
| DpnI | GATC | 3 cut(s) | 268, 279, 421 |
| DpnII | GATC | 3 cut(s) | 266, 277, 419 |
| Eam1104I | CTCTTC | 1 cut(s) | 179 |
| EarI | CTCTTC | 1 cut(s) | 179 |
| FaeI | CATG | 3 cut(s) | 194, 316, 397 |
| FatI | CATG | 3 cut(s) | 190, 312, 393 |
| FauNDI | CATATG | 1 cut(s) | 72 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 1 cut(s) | 165 |
| Fsp4HI | GCNGC | 1 cut(s) | 165 |
| GlaI | GCGC | 1 cut(s) | 177 |
| GluI | GCNGC | 1 cut(s) | 165 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1II | CATG | 3 cut(s) | 194, 316, 397 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HinfI | GANTC | 2 cut(s) | 56, 92 |
| Hpy188I | TCNGA | 4 cut(s) | 112, 155, 243, 271 |
| Hpy188III | TCNNGA | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 3 cut(s) | 70, 341, 377 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 173 |
| HpyF3I | CTNAG | 1 cut(s) | 389 |
| Hsp92II | CATG | 3 cut(s) | 194, 316, 397 |
| HspAI | GCGC | 1 cut(s) | 176 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| Kzo9I | GATC | 3 cut(s) | 266, 277, 419 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| LpnPI | CCDG | 5 cut(s) | 81, 113, 283, 290, 335 |
| Lsp1109I | GCAGC | 1 cut(s) | 151 |
| LweI | GCATC | 1 cut(s) | 364 |
| MaeIII | GTNAC | 1 cut(s) | 327 |
| MalI | GATC | 3 cut(s) | 268, 279, 421 |
| MboI | GATC | 3 cut(s) | 266, 277, 419 |
| MboII | GAAGA | 3 cut(s) | 196, 227, 262 |
| MfeI | CAATTG | 1 cut(s) | 210 |
| MhlI | GDGCHC | 1 cut(s) | 390 |
| MluCI | AATT | 3 cut(s) | 8, 210, 364 |
| MmeI | TCCRAC | 1 cut(s) | 194 |
| MnlI | CCTC | 3 cut(s) | 391, 394, 397 |
| MseI | TTAA | 4 cut(s) | 134, 293, 354, 433 |
| MslI | CAYNNNNRTG | 3 cut(s) | 75, 195, 336 |
| MunI | CAATTG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 173 |
| NdeI | CATATG | 1 cut(s) | 72 |
| NdeII | GATC | 3 cut(s) | 266, 277, 419 |
| NlaIII | CATG | 3 cut(s) | 194, 316, 397 |
| NspI | RCATGY | 1 cut(s) | 194 |
| PagI | TCATGA | 1 cut(s) | 312 |
| PfeI | GAWTC | 2 cut(s) | 56, 92 |
| PkrI | GCNGC | 1 cut(s) | 166 |
| RsaI | GTAC | 2 cut(s) | 231, 258 |
| RsaNI | GTAC | 2 cut(s) | 230, 257 |
| RseI | CAYNNNNRTG | 3 cut(s) | 75, 195, 336 |
| SaqAI | TTAA | 4 cut(s) | 134, 293, 354, 433 |
| SatI | GCNGC | 1 cut(s) | 165 |
| Sau3AI | GATC | 3 cut(s) | 266, 277, 419 |
| ScaI | AGTACT | 1 cut(s) | 231 |
| SduI | GDGCHC | 1 cut(s) | 390 |
| SetI | ASST | 1 cut(s) | 17 |
| SfaNI | GCATC | 1 cut(s) | 364 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 75, 195, 336 |
| Sse9I | AATT | 3 cut(s) | 8, 210, 364 |
| TaqI | TCGA | 1 cut(s) | 182 |
| TasI | AATT | 3 cut(s) | 8, 210, 364 |
| TatI | WGTACW | 2 cut(s) | 229, 256 |
| TfiI | GAWTC | 2 cut(s) | 56, 92 |
| Tru1I | TTAA | 4 cut(s) | 134, 293, 354, 433 |
| Tru9I | TTAA | 4 cut(s) | 134, 293, 354, 433 |
| TseI | GCWGC | 1 cut(s) | 164 |
| TspDTI | ATGAA | 5 cut(s) | 17, 35, 54, 129, 192 |
| XapI | RAATTY | 1 cut(s) | 8 |
| XceI | RCATGY | 1 cut(s) | 194 |
| ZrmI | AGTACT | 1 cut(s) | 231 |