Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007385.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

35050 .. 36507

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007385.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggtttggtgttacttcatgcttagaggcatcaactgtctctcagtggcaggaattcgccttgagaaagccagagaaggtcttgaacgagctcatggaaaggactcttctcgtgttaagactccttcaggcaggtcgctatccagagtgtactatctctctgaatgtttgtctacactaagtaggtctacttactttgttgattctgattatagatatttgagactggagctgctggaagggtggtggcgtatcagtggccaggttgataagtcaatgaaggtgttgacttctgcacaagagaagttcacccagcaacatcttgaatcaaggaaaagtaaacgacatcgctgggcagtagatgattcagttgaagctcttgtacgcatgggctttgacagatcattaggttacataaaacagatgttattatacttggtttatgtttgtgaggctaagggcgcgctcactctgatgtttacaactttgtggtcagtggtcgaagctttgcagggtggaggcgcaatggaccaaacaatctgtcgactgctctcgggacaggcaccaaaccccacaaaagctgctaaccaatctgaggtaatttctgcagtcggtgctaacaacaatagccaatctgatgttgcaactgacattgcaaattctcttgcttcaatgcttgataagcaaaatggtcaagtgggaggtccttcaacgtctggtaatgcatcagagcgtgatgcagaaatggaaaggcaacttgctgaagaactagctcaaggggatgtttcattgactatgacattgaagtttctagagaaggtgaagccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

276

Amino Acids

30.68

Weight (kDa)

8.53

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	562
AccI	GTMKAC	3 cut(s)	173, 188, 544
AccII	CGCG	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	54, 658
AcuI	CTGAAG	2 cut(s)	111, 783
AfaI	GTAC	2 cut(s)	152, 384
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	6 cut(s)	86, 326, 374, 672, 711, 805
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	6 cut(s)	92, 232, 377, 506, 581, 773
AluI	AGCT	6 cut(s)	92, 232, 377, 506, 581, 773
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	44, 217
Ama87I	CYCGRG	1 cut(s)	553
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	232, 581
ApoI	RAATTY	2 cut(s)	54, 658
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspLEI	GCGC	3 cut(s)	464, 466, 524
AspS9I	GGNCC	2 cut(s)	529, 704
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	2 cut(s)	529, 704
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BauI	CACGAG	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	219, 568
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	44, 217
BfaI	CTAG	2 cut(s)	770, 812
BfmI	CTRYAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	233, 582
BlsI	GCNGC	2 cut(s)	234, 583
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	529, 704
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	529, 704
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	39, 727, 734
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	83, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	531, 651
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	2 cut(s)	531, 651
BseMII	CTCAG	2 cut(s)	57, 585
BseNI	ACTGG	1 cut(s)	231
BsePI	GCGCGC	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	219, 568
BseYI	CCCAGC	2 cut(s)	312, 351
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	2 cut(s)	44, 217
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	56, 586
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	531, 651
BsrI	ACTGG	1 cut(s)	231
BssHII	GCGCGC	1 cut(s)	462
BssMI	GATC	1 cut(s)	401
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	5 cut(s)	23, 43, 179, 456, 594
BstF5I	GGATG	1 cut(s)	787
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	3 cut(s)	464, 466, 524
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	2 cut(s)	44, 217
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 614, 682
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	219, 568
BsuRI	GGCC	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	787
BtsIMutI	CAGTG	3 cut(s)	51, 262, 501
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	464
CfoI	GCGC	3 cut(s)	464, 466, 524
Cfr13I	GGNCC	2 cut(s)	529, 704
Csp6I	GTAC	2 cut(s)	151, 383
CviAII	CATG	3 cut(s)	19, 95, 388
CviQI	GTAC	2 cut(s)	151, 383
DdeI	CTNAG	5 cut(s)	23, 43, 179, 456, 594
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	529, 704
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	111, 783
Eco88I	CYCGRG	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	3 cut(s)	22, 98, 391
FaiI	YATR	9 cut(s)	20, 96, 213, 389, 416, 433, 444, 797, 829
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	18, 94, 387
FblI	GTMKAC	3 cut(s)	173, 188, 544
Fnu4HI	GCNGC	2 cut(s)	233, 582
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	233, 582
FspBI	CTAG	2 cut(s)	770, 812
GlaI	GCGC	3 cut(s)	463, 465, 523
GluI	GCNGC	2 cut(s)	233, 582
GsaI	CCCAGC	2 cut(s)	316, 355
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	261
HhaI	GCGC	3 cut(s)	464, 466, 524
Hin1II	CATG	3 cut(s)	22, 98, 391
Hin6I	GCGC	3 cut(s)	462, 464, 522
HinP1I	GCGC	3 cut(s)	462, 464, 522
HincII	GTYRAC	2 cut(s)	288, 545
HindII	GTYRAC	2 cut(s)	288, 545
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	5 cut(s)	104, 121, 203, 326, 365
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	8 cut(s)	151, 174, 189, 288, 309, 341, 480, 545
Hpy188I	TCNGA	6 cut(s)	163, 208, 474, 595, 637, 730
Hpy188III	TCNNGA	5 cut(s)	83, 144, 323, 555, 812
Hpy8I	GTNNAC	8 cut(s)	151, 174, 189, 288, 309, 341, 480, 545
HpyAV	CCTTC	6 cut(s)	71, 135, 233, 274, 717, 811
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	7 cut(s)	296, 511, 608, 644, 656, 725, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 614, 682
HpyF3I	CTNAG	5 cut(s)	23, 43, 179, 456, 594
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	3 cut(s)	22, 98, 391
HspAI	GCGC	3 cut(s)	462, 464, 522
Kzo9I	GATC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	219, 568
LweI	GCATC	3 cut(s)	39, 727, 734
MaeI	CTAG	2 cut(s)	770, 812
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	2 cut(s)	11, 410
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	2 cut(s)	99, 776
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	54, 600, 658
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	98, 115
MnlI	CCTC	5 cut(s)	20, 445, 512, 589, 695
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	461, 614, 682
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	3 cut(s)	22, 98, 391
NlaIV	GGNNCC	1 cut(s)	564
NsiI	ATGCAT	1 cut(s)	727
PauI	GCGCGC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	203, 326, 365
PkrI	GCNGC	2 cut(s)	234, 583
PleI	GAGTC	2 cut(s)	98, 115
PpsI	GAGTC	2 cut(s)	98, 115
PpuMI	RGGWCCY	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	2 cut(s)	312, 351
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	529, 704
PspPPI	RGGWCCY	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	610
PteI	GCGCGC	1 cut(s)	462
RsaI	GTAC	2 cut(s)	152, 384
RsaNI	GTAC	2 cut(s)	151, 383
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	233, 582
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	2 cut(s)	529, 704
SchI	GAGTC	2 cut(s)	98, 115
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	39, 727, 734
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	2 cut(s)	529, 704
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	62, 774
SmoI	CTYRAG	2 cut(s)	62, 774
Sse9I	AATT	3 cut(s)	54, 600, 658
SspMI	CTAG	2 cut(s)	770, 812
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	2 cut(s)	501, 544
TasI	AATT	3 cut(s)	54, 600, 658
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	203, 326, 365
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	3 cut(s)	51, 262, 501
TseI	GCWGC	2 cut(s)	232, 581
TspDTI	ATGAA	3 cut(s)	7, 293, 777
TspRI	CASTG	3 cut(s)	51, 262, 501
VpaK11BI	GGWCC	2 cut(s)	529, 704
XapI	RAATTY	2 cut(s)	54, 658
XbaI	TCTAGA	1 cut(s)	811
XmiI	GTMKAC	3 cut(s)	173, 188, 544
XspI	CTAG	2 cut(s)	770, 812
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.