Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

20137026 .. 20146273

Gene Structure 9248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCAGAACCTATTCTCTGCAACTCTCTCCCAAGAACGCAGAGCTGAGATTATCGAAATAGAGCGAAATAAGGCAAATCCTTTGAAGTACTGGCTGCCGGAAGGAAGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGCTTAAAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGCAGCTTATGTCTCTTAAACTCTGTGGTTTGTATTTTCTTCCTTTTTTTCATTCTTGTAGGAGGCTCTCTCTCTGCGATCCATTGGTTATTAAGCTGGTCGATAATCCTTCTGTACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATAAACTGGCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAGGGTCTTGAACAAGCTCATGGAAAGGACTCTTCTTGTGTTAAGACTCCTTCAGGCAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGACGGTGTTGACTTCTGTACAAGAGAAGTTCACCCAGATTCTTCATCCTCAACTTGGGTTTCCTTGTAATCCTTGGGAAGTACATTACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

252

Amino Acids

28.77

Weight (kDa)

7.04

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	2 cut(s)	241, 632
AclWI	GGATC	2 cut(s)	232, 410
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	6 cut(s)	89, 189, 216, 453, 684, 747
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	5 cut(s)	85, 173, 181, 194, 551
AluBI	AGCT	5 cut(s)	44, 343, 433, 557, 616
AluI	AGCT	5 cut(s)	44, 343, 433, 557, 616
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	4 cut(s)	139, 224, 354, 486
AlwI	GGATC	2 cut(s)	232, 410
ApeKI	GCWGC	4 cut(s)	94, 122, 340, 616
ApoI	RAATTY	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	81, 109, 352, 603
BccI	CCATC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	4 cut(s)	139, 224, 354, 486
BisI	GCNGC	5 cut(s)	95, 123, 341, 617, 633
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	5 cut(s)	96, 124, 342, 618, 634
BmcAI	AGTACT	2 cut(s)	89, 189
BmsI	GCATC	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	95, 506, 615
Bse3DI	GCAATG	2 cut(s)	161, 321
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	2 cut(s)	161, 321
BseMII	CTCAG	4 cut(s)	36, 130, 340, 522
BseNI	ACTGG	3 cut(s)	95, 506, 615
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	4 cut(s)	81, 109, 352, 603
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	4 cut(s)	139, 224, 354, 486
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	224, 235, 415
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	2 cut(s)	241, 632
BspCNI	CTCAG	4 cut(s)	37, 129, 339, 521
BspDI	ATCGAT	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	249
BspPI	GGATC	2 cut(s)	232, 410
BsrDI	GCAATG	2 cut(s)	161, 321
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	3 cut(s)	95, 506, 615
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	3 cut(s)	224, 235, 415
BssT1I	CCWWGG	1 cut(s)	737
Bst4CI	ACNGT	2 cut(s)	644, 670
Bst6I	CTCTTC	2 cut(s)	137, 577
BstAUI	TGTACA	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	5 cut(s)	45, 116, 326, 488, 508
BstF5I	GGATG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	227, 238, 418
BstMAI	GTCTC	4 cut(s)	139, 224, 354, 486
BstMBI	GATC	3 cut(s)	224, 235, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	81, 109, 352, 603
Bsu15I	ATCGAT	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	516, 649
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	6 cut(s)	88, 188, 215, 452, 683, 746
CviAII	CATG	5 cut(s)	149, 250, 331, 484, 560
CviQI	GTAC	6 cut(s)	88, 188, 215, 452, 683, 746
DdeI	CTNAG	5 cut(s)	45, 116, 326, 488, 508
DpnI	GATC	3 cut(s)	226, 237, 417
DpnII	GATC	3 cut(s)	224, 235, 415
Eam1104I	CTCTTC	2 cut(s)	137, 577
EarI	CTCTTC	2 cut(s)	137, 577
Eco130I	CCWWGG	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	5 cut(s)	152, 253, 334, 487, 563
FatI	CATG	5 cut(s)	148, 249, 330, 483, 559
FauI	CCCGC	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	5 cut(s)	95, 123, 341, 617, 633
FokI	GGATG	1 cut(s)	696
Fsp4HI	GCNGC	5 cut(s)	95, 123, 341, 617, 633
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	95, 123, 341, 617, 633
GsuI	CTGGAG	1 cut(s)	632
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	5 cut(s)	152, 253, 334, 487, 563
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	4 cut(s)	114, 569, 586, 703
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	3 cut(s)	113, 675, 696
Hpy188I	TCNGA	2 cut(s)	201, 229
Hpy188III	TCNNGA	2 cut(s)	250, 548
Hpy8I	GTNNAC	3 cut(s)	113, 675, 696
HpyAV	CCTTC	5 cut(s)	95, 99, 456, 600, 617
HpyCH4III	ACNGT	2 cut(s)	644, 670
HpyCH4V	TGCA	5 cut(s)	4, 20, 278, 314, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	5 cut(s)	45, 116, 326, 488, 508
Hsp92II	CATG	5 cut(s)	152, 253, 334, 487, 563
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	224, 235, 415
LmnI	GCTCC	3 cut(s)	130, 337, 613
Lsp1109I	GCAGC	4 cut(s)	81, 109, 352, 603
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	3 cut(s)	226, 237, 417
MboI	GATC	3 cut(s)	224, 235, 415
MboII	GAAGA	6 cut(s)	154, 185, 220, 368, 564, 698
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	4 cut(s)	168, 301, 519, 754
MlyI	GAGTC	3 cut(s)	108, 563, 580
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	328, 393, 535, 723
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	5 cut(s)	291, 354, 429, 582, 757
MslI	CAYNNNNRTG	2 cut(s)	153, 273
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	3 cut(s)	224, 235, 415
NlaIII	CATG	5 cut(s)	152, 253, 334, 487, 563
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	703
PkrI	GCNGC	5 cut(s)	96, 124, 342, 618, 634
PleI	GAGTC	3 cut(s)	108, 563, 580
PpsI	GAGTC	3 cut(s)	108, 563, 580
RsaI	GTAC	6 cut(s)	89, 189, 216, 453, 684, 747
RsaNI	GTAC	6 cut(s)	88, 188, 215, 452, 683, 746
RseI	CAYNNNNRTG	2 cut(s)	153, 273
SaqAI	TTAA	5 cut(s)	291, 354, 429, 582, 757
SatI	GCNGC	5 cut(s)	95, 123, 341, 617, 633
Sau3AI	GATC	3 cut(s)	224, 235, 415
ScaI	AGTACT	2 cut(s)	89, 189
SchI	GAGTC	3 cut(s)	108, 563, 580
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	12, 46, 345, 435, 559, 618, 654
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	153, 273
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	4 cut(s)	168, 301, 519, 754
SsiI	CCGC	2 cut(s)	241, 632
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	2 cut(s)	644, 670
TaqI	TCGA	4 cut(s)	54, 140, 438, 462
TasI	AATT	4 cut(s)	168, 301, 519, 754
TatI	WGTACW	6 cut(s)	87, 187, 214, 451, 682, 745
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	5 cut(s)	291, 354, 429, 582, 757
Tru9I	TTAA	5 cut(s)	291, 354, 429, 582, 757
TscAI	CASTG	2 cut(s)	516, 649
TseI	GCWGC	4 cut(s)	94, 122, 340, 616
TspDTI	ATGAA	4 cut(s)	150, 377, 472, 698
TspRI	CASTG	2 cut(s)	516, 649
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	11
ZrmI	AGTACT	2 cut(s)	89, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.