Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023463.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

3388 .. 4839

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023463.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcttagagacataaactggctctcagtggcaggaattcgccttgagaaagccagagaaggtcttgaacgagctcatggaaaggacttttctcgtgttagactccttcaggcaggttgttatccagagcgtgcactcagtcttagctttgcagggtggagggacaatggaccaagcaatctgtcaactgctctcggtacatcaccaaaccccacagatgctgctgaccaatctgaggcaattcctgcagtcaatgctaacaacaatagtcaatctgatgttgcaattgacattgcaaattctcttgcgtcagtgcttgataatcaaaatggtcaagttggaggttctccaacgtctagtaatgcattagagcgtgattcagaaatggaaagccaacttgctgaagaactagcacaaggagatgctttctctgactatgatattgaagttactagacaaggtgaagtcataagtgagtacttggctctactgaattcagcgggaacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

4.38

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AciI	CCGC	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	36, 298, 493
AcuI	CTGAAG	2 cut(s)	92, 423
AfaI	GTAC	2 cut(s)	199, 479
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	68, 446
AluBI	AGCT	2 cut(s)	74, 147
AluI	AGCT	2 cut(s)	74, 147
Alw21I	GWGCWC	2 cut(s)	76, 136
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	3 cut(s)	36, 298, 493
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	195, 473
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	76, 136
BbvI	GCAGC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	3 cut(s)	357, 410, 453
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmsI	GCATC	2 cut(s)	208, 412
BpuEI	CTTGAG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	39, 151, 225
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	76, 136
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	76, 136
BspACI	CCGC	1 cut(s)	500
BspCNI	CTCAG	3 cut(s)	38, 150, 226
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
BstAPI	GCANNNNNTGC	2 cut(s)	245, 254
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	5 cut(s)	5, 25, 137, 143, 234
BstMAI	GTCTC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	33, 318
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	198, 478
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	22, 53, 74, 147, 393, 485
CviKI_1	RGCY	6 cut(s)	22, 53, 74, 147, 393, 485
CviQI	GTAC	2 cut(s)	198, 478
DdeI	CTNAG	5 cut(s)	5, 25, 137, 143, 234
Ecl136II	GAGCTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	92, 423
EcoICRI	GAGCTC	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	36, 493
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	14, 78, 438, 470
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	76
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	357, 410, 453
GluI	GCNGC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	102, 377
HphI	GGTGA	2 cut(s)	195, 473
Hpy166II	GTNNAC	2 cut(s)	134, 186
Hpy188I	TCNGA	4 cut(s)	235, 277, 382, 433
Hpy188III	TCNNGA	2 cut(s)	65, 125
Hpy8I	GTNNAC	2 cut(s)	134, 186
HpyAV	CCTTC	2 cut(s)	53, 116
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	6 cut(s)	134, 152, 248, 284, 296, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpyF3I	CTNAG	5 cut(s)	5, 25, 137, 143, 234
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	4, 18, 67, 95, 99, 138, 138, 258
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	208, 412
MaeI	CTAG	3 cut(s)	357, 410, 453
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	448
MboII	GAAGA	1 cut(s)	416
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	76, 136
MluCI	AATT	5 cut(s)	36, 240, 285, 298, 493
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	319, 374
MnlI	CCTC	3 cut(s)	153, 229, 335
Mph1103I	ATGCAT	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	500
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NlaIII	CATG	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	199, 479
RsaNI	GTAC	2 cut(s)	198, 478
SacI	GAGCTC	1 cut(s)	76
SatI	GCNGC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	170
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	76, 136
SetI	ASST	7 cut(s)	64, 76, 118, 149, 346, 356, 463
SfaNI	GCATC	2 cut(s)	208, 412
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	36, 240, 285, 298, 493
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	3 cut(s)	357, 410, 453
SstI	GAGCTC	1 cut(s)	76
TaiI	ACGT	1 cut(s)	356
TasI	AATT	5 cut(s)	36, 240, 285, 298, 493
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	377
TscAI	CASTG	2 cut(s)	33, 318
TseI	GCWGC	1 cut(s)	221
TspRI	CASTG	2 cut(s)	33, 318
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	3 cut(s)	36, 298, 493
XspI	CTAG	3 cut(s)	357, 410, 453
ZrmI	AGTACT	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.