Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

11399705 .. 11401599

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTCGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTCTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACCGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATACTTGCTGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTCGATTTGACAAATCCACAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACACCACAGATGCAGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTAGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

339

Amino Acids

37.69

Weight (kDa)

5.06

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	424, 709
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	2 cut(s)	284, 1007
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	3 cut(s)	150, 805, 1000
AcuI	CTGAAG	6 cut(s)	206, 341, 385, 497, 585, 930
AfaI	GTAC	3 cut(s)	336, 618, 986
AfiI	CCNNNNNNNGG	3 cut(s)	301, 358, 742
AgsI	TTSAA	5 cut(s)	182, 560, 608, 858, 953
AluBI	AGCT	8 cut(s)	64, 188, 268, 355, 611, 653, 731, 992
AluI	AGCT	8 cut(s)	64, 188, 268, 355, 611, 653, 731, 992
Alw21I	GWGCWC	3 cut(s)	17, 190, 250
Alw26I	GTCTC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	1 cut(s)	624
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	268, 472, 728
ApoI	RAATTY	3 cut(s)	150, 805, 1000
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	676, 851
AsuHPI	GGTGA	3 cut(s)	284, 340, 980
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	2 cut(s)	676, 851
BaeGI	GKGCMC	2 cut(s)	250, 427
BanI	GGYRCC	2 cut(s)	424, 709
BanII	GRGCYC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BauI	CACGAG	1 cut(s)	207
Bbv12I	GWGCWC	3 cut(s)	17, 190, 250
BbvI	GCAGC	3 cut(s)	255, 459, 740
BccI	CCATC	2 cut(s)	58, 461
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	864, 917, 960
BfmI	CTRYAG	2 cut(s)	578, 753
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	269, 285, 473, 729
BlpI	GCTNAGC	1 cut(s)	16
BlsI	GCNGC	4 cut(s)	270, 286, 474, 730
BmcAI	AGTACT	1 cut(s)	986
Bme18I	GGWCC	2 cut(s)	676, 851
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	676, 851
BmiI	GGNNCC	2 cut(s)	426, 711
BmsI	GCATC	4 cut(s)	586, 715, 881, 919
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	295, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 358, 742
Bse1I	ACTGG	2 cut(s)	137, 267
Bse3DI	GCAATG	2 cut(s)	11, 798
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	295, 428
BseGI	GGATG	2 cut(s)	373, 438
BseLI	CCNNNNNNNGG	3 cut(s)	301, 358, 742
BseMI	GCAATG	2 cut(s)	11, 798
BseMII	CTCAG	3 cut(s)	30, 153, 732
BseNI	ACTGG	2 cut(s)	137, 267
BseRI	GAGGAG	2 cut(s)	40, 43
BseSI	GKGCMC	2 cut(s)	250, 427
BseXI	GCAGC	3 cut(s)	255, 459, 740
BseYI	CCCAGC	1 cut(s)	351
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	2 cut(s)	424, 709
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	3 cut(s)	17, 190, 250
BsiHKCI	CYCGRG	1 cut(s)	700
BslFI	GGGAC	2 cut(s)	682, 717
BslI	CCNNNNNNNGG	3 cut(s)	301, 358, 742
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	682, 717
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	4 cut(s)	17, 190, 250, 427
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	46, 635
Bsp1720I	GCTNAGC	1 cut(s)	16
BspACI	CCGC	2 cut(s)	284, 1007
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	3 cut(s)	29, 152, 733
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	426, 711
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	2 cut(s)	424, 709
BsrDI	GCAATG	2 cut(s)	11, 798
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	137, 267
BssECI	CCNNGG	2 cut(s)	295, 428
BssMI	GATC	2 cut(s)	46, 635
BssNAI	GTATAC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	207
Bst1107I	GTATAC	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	296, 499, 582
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	3 cut(s)	596, 752, 761
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	6 cut(s)	16, 119, 139, 649, 741, 988
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	373, 438
BstKTI	GATC	2 cut(s)	49, 638
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	46, 635
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 478, 596, 650, 752, 761
BstSFI	CTRYAG	2 cut(s)	578, 753
BstSLI	GKGCMC	2 cut(s)	250, 427
BstV1I	GCAGC	3 cut(s)	255, 459, 740
BstZ17I	GTATAC	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	626
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	373, 438
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	5 cut(s)	147, 504, 587, 692, 936
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	676, 851
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	804
Csp6I	GTAC	3 cut(s)	335, 617, 985
CviAII	CATG	4 cut(s)	21, 115, 191, 622
CviQI	GTAC	3 cut(s)	335, 617, 985
DdeI	CTNAG	6 cut(s)	16, 119, 139, 649, 741, 988
DpnI	GATC	2 cut(s)	48, 637
DpnII	GATC	2 cut(s)	46, 635
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	676, 851
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	6 cut(s)	206, 341, 385, 497, 585, 930
Eco88I	CYCGRG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRI	GAATTC	2 cut(s)	150, 1000
EcoT22I	ATGCAT	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	4 cut(s)	24, 118, 194, 625
FaqI	GGGAC	2 cut(s)	682, 717
FatI	CATG	4 cut(s)	20, 114, 190, 621
FauI	CCCGC	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	269, 285, 473, 729
FokI	GGATG	2 cut(s)	380, 445
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	269, 285, 473, 729
FspBI	CTAG	3 cut(s)	864, 917, 960
GluI	GCNGC	4 cut(s)	269, 285, 473, 729
GsaI	CCCAGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	626
HgaI	GACGC	1 cut(s)	804
Hin1II	CATG	4 cut(s)	24, 118, 194, 625
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	5 cut(s)	200, 216, 371, 560, 884
HphI	GGTGA	3 cut(s)	284, 340, 980
Hpy166II	GTNNAC	6 cut(s)	248, 327, 348, 466, 575, 692
Hpy188I	TCNGA	5 cut(s)	404, 742, 784, 877, 889
Hpy188III	TCNNGA	5 cut(s)	179, 239, 443, 557, 702
Hpy8I	GTNNAC	6 cut(s)	248, 327, 348, 466, 575, 692
HpyAV	CCTTC	7 cut(s)	87, 167, 230, 269, 313, 499, 864
HpyCH4III	ACNGT	3 cut(s)	296, 499, 582
HpyCH4IV	ACGT	1 cut(s)	860
HpyCH4V	TGCA	9 cut(s)	4, 88, 248, 658, 728, 755, 791, 803, 872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 478, 596, 650, 752, 761
HpyF3I	CTNAG	6 cut(s)	16, 119, 139, 649, 741, 988
HpySE526I	ACGT	1 cut(s)	860
Hsp92II	CATG	4 cut(s)	24, 118, 194, 625
Kzo9I	GATC	2 cut(s)	46, 635
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	255, 459, 740
LweI	GCATC	4 cut(s)	586, 715, 881, 919
MaeI	CTAG	3 cut(s)	864, 917, 960
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	1 cut(s)	955
MalI	GATC	2 cut(s)	48, 637
MboI	GATC	2 cut(s)	46, 635
MboII	GAAGA	3 cut(s)	195, 531, 923
MfeI	CAATTG	1 cut(s)	792
MhlI	GDGCHC	4 cut(s)	17, 190, 250, 427
MluCI	AATT	6 cut(s)	150, 535, 747, 792, 805, 1000
MlyI	GAGTC	2 cut(s)	194, 210
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	9 cut(s)	18, 21, 24, 423, 481, 558, 659, 736, 842
Mph1103I	ATGCAT	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	1007
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	509
MwoI	GCNNNNNNNGC	6 cut(s)	361, 478, 596, 650, 752, 761
NdeII	GATC	2 cut(s)	46, 635
NlaIII	CATG	4 cut(s)	24, 118, 194, 625
NlaIV	GGNNCC	2 cut(s)	426, 711
NsiI	ATGCAT	1 cut(s)	874
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	371, 560, 884
PkrI	GCNGC	4 cut(s)	270, 286, 474, 730
PleI	GAGTC	2 cut(s)	194, 210
PpsI	GAGTC	2 cut(s)	194, 210
PpuMI	RGGWCCY	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	426, 711
PspPI	GGNCC	2 cut(s)	676, 851
PspPPI	RGGWCCY	1 cut(s)	851
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	3 cut(s)	336, 618, 986
RsaNI	GTAC	3 cut(s)	335, 617, 985
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	4 cut(s)	269, 285, 473, 729
Sau3AI	GATC	2 cut(s)	46, 635
Sau96I	GGNCC	2 cut(s)	676, 851
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	2 cut(s)	194, 210
SduI	GDGCHC	4 cut(s)	17, 190, 250, 427
SfaNI	GCATC	4 cut(s)	586, 715, 881, 919
SfcI	CTRYAG	2 cut(s)	578, 753
SinI	GGWCC	2 cut(s)	676, 851
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	6 cut(s)	150, 535, 747, 792, 805, 1000
SsiI	CCGC	2 cut(s)	284, 1007
SspMI	CTAG	3 cut(s)	864, 917, 960
SstI	GAGCTC	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	296, 499, 582
TaiI	ACGT	1 cut(s)	863
TaqI	TCGA	4 cut(s)	69, 93, 513, 563
TasI	AATT	6 cut(s)	150, 535, 747, 792, 805, 1000
TatI	WGTACW	2 cut(s)	334, 984
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	3 cut(s)	371, 560, 884
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	5 cut(s)	147, 504, 587, 699, 943
TseI	GCWGC	3 cut(s)	268, 472, 728
TspDTI	ATGAA	3 cut(s)	103, 332, 384
TspRI	CASTG	5 cut(s)	147, 504, 587, 699, 943
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	676, 851
XapI	RAATTY	3 cut(s)	150, 805, 1000
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	3 cut(s)	864, 917, 960
ZrmI	AGTACT	1 cut(s)	986
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.