Rroxscaffold_5G00365380

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
46948452 .. 46957031
8580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365380.1

Sequence Viewer

Length: 432 bp
ATGGAGAGGGACGCAGATCTTGGACAAAACTGCGAAGAAGACATTGGTTGGATAGTTGAGCATGCGGGGCGAGTGGAGGTTGGAGTTGGTGAAGAAGAGGAAGGTGATTTCCGGTTTGATTTGGAACCGAGGGAGGGGATTCTCCTCTTCGTTCTTCGCCTTCGACCACAACCCTCCTCCTCATCTTCGGTCTCCGGCTACAATCACAACCTGACCCTCCTTGTCCTCCTCCTTTTCCGCCTCGGACCAGCTCCTTTGCTCGAAGACGGTGAAGAGAATCAGCCTCTTCGTTCTCCGCCTTCGACAAAAACCATCCTCCTCTTCGAGAAAAGCTCGAACCCCGTGGAGGATGATTCTGCACGAAAGAGGCACGAAAGAAGCTCGAAAGAAGCAAAGGTTCTCTTTGACTTATGTTATATGGCTTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.08

Weight (kDa)

4.7

Isoelectric Point (pI)

69.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 65, 238, 296
AfiI CCNNNNNNNGG 2 cut(s) 134, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 251, 333, 381
AluI AGCT 3 cut(s) 251, 333, 381
Alw26I GTCTC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 101, 116, 281
AvaII GGWCC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 45, 270
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 196
BglII AGATCT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 126
BpiI GAAGAC 2 cut(s) 45, 270
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 128, 241, 342
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 346
BseDI CCNNGG 3 cut(s) 128, 241, 342
BseGI GGATG 2 cut(s) 312, 355
BseLI CCNNNNNNNGG 2 cut(s) 134, 346
BseRI GAGGAG 5 cut(s) 134, 166, 169, 218, 308
BsgI GTGCAG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 112, 195
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 134, 346
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 3 cut(s) 65, 238, 296
BspLI GGNNCC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 128, 241, 342
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 5 cut(s) 90, 152, 267, 291, 326
BstC8I GCNNGC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 312, 355
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 45, 270
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 312, 355
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 20
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 198, 251, 283, 333, 381, 422
CviKI_1 RGCY 6 cut(s) 198, 251, 283, 333, 381, 422
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 5 cut(s) 90, 152, 267, 291, 326
EarI CTCTTC 5 cut(s) 90, 152, 267, 291, 326
EciI GGCGGA 2 cut(s) 227, 285
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 245
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 63, 412, 417, 419, 430
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 58
FokI GGATG 2 cut(s) 299, 362
HapII CCGG 2 cut(s) 112, 195
HgaI GACGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 65
HinfI GANTC 3 cut(s) 139, 277, 353
HpaII CCGG 2 cut(s) 112, 195
HphI GGTGA 3 cut(s) 101, 116, 281
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 95, 170, 309
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 4 cut(s) 125, 208, 224, 261
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MflI RGATCY 1 cut(s) 16
MmeI TCCRAC 2 cut(s) 29, 61
MspI CCGG 2 cut(s) 112, 195
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 1 cut(s) 65
PaeI GCATGC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 139, 277, 353
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 16
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 245
SetI ASST 7 cut(s) 81, 106, 213, 253, 335, 383, 399
SinI GGWCC 1 cut(s) 245
SphI GCATGC 1 cut(s) 65
SsiI CCGC 3 cut(s) 65, 238, 296
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 6 cut(s) 163, 261, 302, 324, 335, 383
TaqII GACCGA 1 cut(s) 178
TfiI GAWTC 3 cut(s) 139, 277, 353
VpaK11BI GGWCC 1 cut(s) 245
XceI RCATGY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.