RchiOBHm_Chr2g0147341

NEDD8 ultimate buster

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
64972017 .. 64972953
937 bp
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UTR
Exon/CDS
Intron
PRQ51698

Sequence Viewer

Length: 486 bp
ATGACAGTGGAGAAGGCATTGGATTTGACCAATTCTTCCATACAGCACCTTGAATCAAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAAATCATTAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCAACTGCTCTCGGGACAGGCACCAAACCCCACGGACGCTGCGAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATGGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAGTGCTTGATAATCAAAATGGTCAAGTTGGAGGTTTTTCAAAGTCTAGTAATGCATCAGAGCGTGATTCAGAAAGGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTAATAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTTAG

Protein Analysis

161

Amino Acids

17.08

Weight (kDa)

4.19

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 78, 420
AfaI GTAC 2 cut(s) 111, 476
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 4 cut(s) 53, 101, 348, 443
AluBI AGCT 2 cut(s) 104, 143
AluI AGCT 2 cut(s) 104, 143
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 295
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 199
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbvI GCAGC 1 cut(s) 205
BfaI CTAG 2 cut(s) 354, 407
BfmI CTRYAG 2 cut(s) 71, 243
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 3 cut(s) 79, 371, 409
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 190
BslFI GGGAC 2 cut(s) 172, 207
BslI CCNNNNNNNGG 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 172, 207
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 190
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 7, 75
BstAPI GCANNNNNTGC 3 cut(s) 89, 242, 251
BstDEI CTNAG 3 cut(s) 139, 231, 483
BstDSI CCRYGG 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 89, 242, 251
BstSFI CTRYAG 2 cut(s) 71, 243
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 210
BtsIMutI CAGTG 4 cut(s) 12, 80, 315, 426
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 2 cut(s) 224, 294
Csp6I GTAC 2 cut(s) 110, 475
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 104, 119, 143, 390, 482
CviKI_1 RGCY 5 cut(s) 104, 119, 143, 390, 482
CviQI GTAC 2 cut(s) 110, 475
DdeI CTNAG 3 cut(s) 139, 231, 483
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 78, 420
Eco88I CYCGRG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 41, 116, 435, 467
FaqI GGGAC 2 cut(s) 172, 207
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 354, 407
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 119
HgaI GACGC 2 cut(s) 224, 294
Hin1II CATG 1 cut(s) 118
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 2 cut(s) 53, 374
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 68, 182
Hpy188I TCNGA 4 cut(s) 232, 274, 367, 379
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 2 cut(s) 68, 182
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 2 cut(s) 7, 75
HpyCH4V TGCA 5 cut(s) 148, 245, 281, 293, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 242, 251
HpyF3I CTNAG 3 cut(s) 139, 231, 483
Hsp92II CATG 1 cut(s) 118
LpnPI CCDG 3 cut(s) 134, 182, 255
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 3 cut(s) 79, 371, 409
MaeI CTAG 2 cut(s) 354, 407
MboII GAAGA 2 cut(s) 27, 413
MfeI CAATTG 1 cut(s) 282
MluCI AATT 4 cut(s) 31, 237, 282, 295
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 149, 226, 332
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 447
MunI CAATTG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 89, 242, 251
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PfeI GAWTC 2 cut(s) 53, 374
PkrI GCNGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 166
PstI CTGCAG 1 cut(s) 247
RsaI GTAC 2 cut(s) 111, 476
RsaNI GTAC 2 cut(s) 110, 475
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 476
SetI ASST 5 cut(s) 51, 106, 145, 343, 460
SfaNI GCATC 3 cut(s) 79, 371, 409
SfcI CTRYAG 2 cut(s) 71, 243
SinI GGWCC 1 cut(s) 166
Sse9I AATT 4 cut(s) 31, 237, 282, 295
SspMI CTAG 2 cut(s) 354, 407
TaaI ACNGT 2 cut(s) 7, 75
TasI AATT 4 cut(s) 31, 237, 282, 295
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 53, 374
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 4 cut(s) 12, 80, 315, 433
TseI GCWGC 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 4 cut(s) 12, 80, 315, 433
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 295
XspI CTAG 2 cut(s) 354, 407
ZrmI AGTACT 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.