Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

57052912 .. 57055935

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG436200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTATCAAGAGCATCTTCTTGTTCATTCTTCGCCATTCAGAAGGGCGAAATAAGGCAAATCCTTTTAAGTATTGGCTGCCGGAAGGAAGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGATTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGAAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGCTTATGTCTCCTAAACTTTGTGGTTTGTATTTTCTTCCTTTTTTTCATTCTTGTAGGAGGCTTTCTCTCTGCGATCCATTGGTTATTAAGGTGAGTGAAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAAAGAAGGTCTTGAACGAGCTCATGGAAAGGAATCTTCTCGTGTTAGACTCCTTCAGGCGGGTCGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTGTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

255

Amino Acids

29.24

Weight (kDa)

9.35

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	3 cut(s)	226, 527, 584
AclWI	GGATC	2 cut(s)	217, 392
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	3 cut(s)	506, 641, 685
AfaI	GTAC	3 cut(s)	174, 201, 636
AfiI	CCNNNNNNNGG	3 cut(s)	526, 601, 658
AgsI	TTSAA	4 cut(s)	158, 166, 179, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	4 cut(s)	325, 488, 568, 655
AluI	AGCT	4 cut(s)	325, 488, 568, 655
Alw21I	GWGCWC	3 cut(s)	312, 490, 550
Alw26I	GTCTC	3 cut(s)	124, 209, 336
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	217, 392
AlwNI	CAGNNNCTG	1 cut(s)	664
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	79, 107, 568
ApoI	RAATTY	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	427, 584, 640
BaeGI	GKGCMC	2 cut(s)	550, 727
BanII	GRGCYC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	3 cut(s)	312, 490, 550
BbvI	GCAGC	3 cut(s)	66, 94, 555
BccI	CCATC	2 cut(s)	134, 761
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	124, 209, 336
BisI	GCNGC	4 cut(s)	80, 108, 569, 585
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	4 cut(s)	81, 109, 570, 586
BmcAI	AGTACT	1 cut(s)	174
BmsI	GCATC	2 cut(s)	24, 286
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 601, 658
Bse1I	ACTGG	2 cut(s)	437, 567
Bse3DI	GCAATG	2 cut(s)	146, 306
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	673, 738
BseLI	CCNNNNNNNGG	3 cut(s)	526, 601, 658
BseMI	GCAATG	2 cut(s)	146, 306
BseMII	CTCAG	4 cut(s)	115, 325, 453, 719
BseNI	ACTGG	2 cut(s)	437, 567
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	2 cut(s)	550, 727
BseXI	GCAGC	3 cut(s)	66, 94, 555
BseYI	CCCAGC	1 cut(s)	651
BsiHKAI	GWGCWC	3 cut(s)	312, 490, 550
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	526, 601, 658
BsmAI	GTCTC	3 cut(s)	124, 209, 336
Bsp1286I	GDGCHC	4 cut(s)	312, 490, 550, 727
Bsp1407I	TGTACA	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	209, 220, 397
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	3 cut(s)	226, 527, 584
BspCNI	CTCAG	4 cut(s)	114, 324, 452, 720
BspHI	TCATGA	1 cut(s)	234
BspPI	GGATC	2 cut(s)	217, 392
BsrDI	GCAATG	2 cut(s)	146, 306
BsrGI	TGTACA	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	437, 567
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	3 cut(s)	209, 220, 397
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	4 cut(s)	101, 311, 439, 728
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	673, 738
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	212, 223, 400
BstMAI	GTCTC	3 cut(s)	124, 209, 336
BstMBI	GATC	3 cut(s)	209, 220, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 661
BstNSI	RCATGY	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	550, 727
BstV1I	GCAGC	3 cut(s)	66, 94, 555
BstV2I	GAAGAC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	673, 738
BtsIMutI	CAGTG	2 cut(s)	447, 725
Cac8I	GCNNGC	1 cut(s)	546
CaiI	CAGNNNCTG	1 cut(s)	664
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	173, 200, 635
CviAII	CATG	4 cut(s)	134, 235, 316, 491
CviQI	GTAC	3 cut(s)	173, 200, 635
DdeI	CTNAG	4 cut(s)	101, 311, 439, 728
DpnI	GATC	3 cut(s)	211, 222, 399
DpnII	GATC	3 cut(s)	209, 220, 397
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	3 cut(s)	506, 641, 685
EcoICRI	GAGCTC	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	490
FaeI	CATG	4 cut(s)	137, 238, 319, 494
FalI	AAGNNNNNCTT	3 cut(s)	34, 462, 494
FatI	CATG	4 cut(s)	133, 234, 315, 490
FauI	CCCGC	2 cut(s)	219, 520
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	80, 108, 569, 585
FokI	GGATG	2 cut(s)	680, 745
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	4 cut(s)	80, 108, 569, 585
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	80, 108, 569, 585
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	1 cut(s)	584
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	137, 238, 319, 494
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	4 cut(s)	99, 500, 516, 671
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	427, 584, 640
Hpy166II	GTNNAC	4 cut(s)	98, 548, 627, 648
Hpy188I	TCNGA	4 cut(s)	43, 186, 214, 704
Hpy188III	TCNNGA	5 cut(s)	10, 235, 479, 539, 743
Hpy8I	GTNNAC	4 cut(s)	98, 548, 627, 648
HpyAV	CCTTC	7 cut(s)	38, 80, 84, 467, 530, 569, 613
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4V	TGCA	3 cut(s)	263, 299, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 661
HpyF3I	CTNAG	4 cut(s)	101, 311, 439, 728
Hsp92II	CATG	4 cut(s)	137, 238, 319, 494
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	209, 220, 397
LmnI	GCTCC	3 cut(s)	115, 322, 565
Lsp1109I	GCAGC	3 cut(s)	66, 94, 555
LweI	GCATC	2 cut(s)	24, 286
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	211, 222, 399
MboI	GATC	3 cut(s)	209, 220, 397
MboII	GAAGA	8 cut(s)	10, 23, 139, 170, 205, 350, 434, 495
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	4 cut(s)	312, 490, 550, 727
MluCI	AATT	3 cut(s)	153, 286, 450
MlyI	GAGTC	2 cut(s)	93, 510
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	313, 375, 723
MseI	TTAA	3 cut(s)	69, 276, 411
MslI	CAYNNNNRTG	2 cut(s)	138, 258
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	116, 661
NdeII	GATC	3 cut(s)	209, 220, 397
NlaIII	CATG	4 cut(s)	137, 238, 319, 494
NspI	RCATGY	1 cut(s)	137
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	500, 671
PkrI	GCNGC	4 cut(s)	81, 109, 570, 586
PleI	GAGTC	2 cut(s)	93, 510
PpsI	GAGTC	2 cut(s)	93, 510
Psp124BI	GAGCTC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	664
RsaI	GTAC	3 cut(s)	174, 201, 636
RsaNI	GTAC	3 cut(s)	173, 200, 635
RseI	CAYNNNNRTG	2 cut(s)	138, 258
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	3 cut(s)	69, 276, 411
SatI	GCNGC	4 cut(s)	80, 108, 569, 585
Sau3AI	GATC	3 cut(s)	209, 220, 397
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	2 cut(s)	93, 510
SduI	GDGCHC	4 cut(s)	312, 490, 550, 727
SetI	ASST	9 cut(s)	327, 417, 478, 490, 570, 606, 624, 657, 663
SfaNI	GCATC	2 cut(s)	24, 286
SmiMI	CAYNNNNRTG	2 cut(s)	138, 258
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	153, 286, 450
SsiI	CCGC	3 cut(s)	226, 527, 584
SstI	GAGCTC	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	153, 286, 450
TatI	WGTACW	3 cut(s)	172, 199, 634
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	500, 671
Tru1I	TTAA	3 cut(s)	69, 276, 411
Tru9I	TTAA	3 cut(s)	69, 276, 411
TscAI	CASTG	2 cut(s)	447, 732
TseI	GCWGC	3 cut(s)	79, 107, 568
TspDTI	ATGAA	5 cut(s)	16, 135, 359, 632, 684
TspRI	CASTG	2 cut(s)	447, 732
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.