Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

59519831 .. 59522018

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATTGGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCAATGGAAGTACTCAGCATGGAGGAGGTTTGTTACTGGTGCCCTTTTGCAACTGATAGTTTCGCTTTCTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATAAACTGGCTCTCAGTGGCAGGAATTCACCTTGAGAAAGCCAGAGAGGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGCCAATGACGGTGTTGACTTCTGTACAAGAGAAGTTCACCCAGCTTCAGGTTTCCGATTCAAATCCAAATCCTATTTTGGATCGGATGAGCTATCCTAGTTCCTCCAATCGGCGCATACCTCCCAGTTTGGAGGGTCAGTCTGGGCTAATTGCTCTTTATGAATTGATAACTGATCTGCAGGCTCAGATCGAAGTGCAAGGGAATGATCAGGCGAAACTTTGGCAGCATATAGCTGATATCGACGGTCTGTTAGCCCATCAAAGATCAAGAACATTCGCAGAGCAAGAACTGGACCAGTCAAGCATTTTCCGCAGCATTTGCCGCAATGGCATCCTTAAAGCTTTGCGTAATCATCTACATGCTTTGATTCCAAGCTTGCCTCGAAAGTTCGGAGCTTTCCGCAGCCATCTTCATGTTTTGATTCCAAGCTTGCATAGAAAGGTCGGCTTGATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

329

Amino Acids

37.01

Weight (kDa)

6.46

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	5 cut(s)	112, 500, 838, 850, 928
AclWI	GGATC	2 cut(s)	257, 615
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	422, 557
AfaI	GTAC	4 cut(s)	60, 87, 195, 552
AfiI	CCNNNNNNNGG	2 cut(s)	574, 636
AgsI	TTSAA	5 cut(s)	44, 52, 65, 398, 588
Alw21I	GWGCWC	2 cut(s)	406, 466
Alw26I	GTCTC	3 cut(s)	10, 95, 333
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	257, 615
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	4 cut(s)	484, 751, 840, 930
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	7, 642
AspS9I	GGNCC	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	362, 556
AvaII	GGWCC	1 cut(s)	820
BaeGI	GKGCMC	2 cut(s)	227, 466
BanI	GGYRCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	406, 466
BbvI	GCAGC	4 cut(s)	471, 763, 852, 942
BccI	CCATC	5 cut(s)	20, 274, 792, 942, 973
BclI	TGATCA	2 cut(s)	106, 733
BcoDI	GTCTC	3 cut(s)	10, 95, 333
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	704
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	855
BisI	GCNGC	6 cut(s)	485, 501, 752, 841, 850, 931
BlsI	GCNGC	6 cut(s)	486, 502, 753, 842, 851, 932
BmcAI	AGTACT	2 cut(s)	60, 195
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	820
BmiI	GGNNCC	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	172, 867
BmuI	ACTGGG	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 636
Bse1I	ACTGG	6 cut(s)	224, 353, 483, 651, 822, 823
Bse3DI	GCAATG	3 cut(s)	32, 192, 859
Bse8I	GATNNNNATC	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	309
BseGI	GGATG	2 cut(s)	618, 858
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	574, 636
BseMI	GCAATG	3 cut(s)	32, 192, 859
BseMII	CTCAG	3 cut(s)	211, 369, 725
BseNI	ACTGG	6 cut(s)	224, 353, 483, 651, 822, 823
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	2 cut(s)	227, 466
BseXI	GCAGC	4 cut(s)	471, 763, 852, 942
BseYI	CCCAGC	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	406, 466
BslI	CCNNNNNNNGG	2 cut(s)	574, 636
BsmAI	GTCTC	3 cut(s)	10, 95, 333
Bsp1286I	GDGCHC	3 cut(s)	227, 406, 466
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
BspACI	CCGC	5 cut(s)	112, 500, 838, 850, 928
BspCNI	CTCAG	3 cut(s)	210, 368, 724
BspDI	ATCGAT	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	257, 615
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	3 cut(s)	32, 192, 859
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	6 cut(s)	224, 353, 483, 651, 822, 823
BssMI	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	512, 538, 773
Bst6I	CTCTTC	2 cut(s)	8, 424
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	5 cut(s)	114, 462, 708, 905, 959
BstDEI	CTNAG	4 cut(s)	197, 335, 355, 711
BstF5I	GGATG	2 cut(s)	618, 858
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 642
BstKTI	GATC	7 cut(s)	109, 265, 610, 703, 717, 736, 794
BstMAI	GTCTC	3 cut(s)	10, 95, 333
BstMBI	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
BstMWI	GCNNNNNNNGC	5 cut(s)	837, 846, 849, 855, 981
BstNSI	RCATGY	2 cut(s)	23, 890
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	2 cut(s)	227, 466
BstV1I	GCAGC	4 cut(s)	471, 763, 852, 942
Bsu15I	ATCGAT	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	618, 858
BtsIMutI	CAGTG	2 cut(s)	363, 517
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	5 cut(s)	114, 462, 708, 905, 959
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	2 cut(s)	7, 642
Cfr13I	GGNCC	1 cut(s)	820
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	4 cut(s)	59, 86, 194, 551
CviAII	CATG	7 cut(s)	20, 121, 202, 331, 407, 887, 941
CviQI	GTAC	4 cut(s)	59, 86, 194, 551
DdeI	CTNAG	4 cut(s)	197, 335, 355, 711
DpnI	GATC	7 cut(s)	108, 264, 609, 702, 716, 735, 793
DpnII	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
Eam1104I	CTCTTC	2 cut(s)	8, 424
EarI	CTCTTC	2 cut(s)	8, 424
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	422, 557
EcoICRI	GAGCTC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	7 cut(s)	23, 124, 205, 334, 410, 890, 944
FalI	AAGNNNNNCTT	1 cut(s)	959
FatI	CATG	7 cut(s)	19, 120, 201, 330, 406, 886, 940
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	106, 733
Fnu4HI	GCNGC	6 cut(s)	485, 501, 752, 841, 850, 931
FokI	GGATG	2 cut(s)	625, 845
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	6 cut(s)	485, 501, 752, 841, 850, 931
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	2 cut(s)	6, 641
GluI	GCNGC	6 cut(s)	485, 501, 752, 841, 850, 931
GsaI	CCCAGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	2 cut(s)	7, 642
Hin1II	CATG	7 cut(s)	23, 124, 205, 334, 410, 890, 944
Hin6I	GCGC	2 cut(s)	5, 640
HinP1I	GCGC	2 cut(s)	5, 640
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	3 cut(s)	867, 901, 955
HinfI	GANTC	5 cut(s)	416, 432, 584, 895, 949
HphI	GGTGA	2 cut(s)	362, 556
Hpy166II	GTNNAC	3 cut(s)	464, 543, 564
Hpy188I	TCNGA	5 cut(s)	72, 583, 612, 714, 920
Hpy188III	TCNNGA	4 cut(s)	121, 395, 455, 795
Hpy8I	GTNNAC	3 cut(s)	464, 543, 564
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	3 cut(s)	303, 446, 485
HpyCH4III	ACNGT	3 cut(s)	512, 538, 773
HpyCH4V	TGCA	8 cut(s)	149, 185, 233, 304, 464, 706, 724, 961
HpyF10VI	GCNNNNNNNGC	5 cut(s)	837, 846, 849, 855, 981
HpyF3I	CTNAG	4 cut(s)	197, 335, 355, 711
Hsp92II	CATG	7 cut(s)	23, 124, 205, 334, 410, 890, 944
HspAI	GCGC	2 cut(s)	5, 640
Ksp22I	TGATCA	2 cut(s)	106, 733
Kzo9I	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
LmnI	GCTCC	2 cut(s)	481, 920
Lsp1109I	GCAGC	4 cut(s)	471, 763, 852, 942
LweI	GCATC	2 cut(s)	172, 867
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	135, 215
MalI	GATC	7 cut(s)	108, 264, 609, 702, 716, 735, 793
MboI	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
MboII	GAAGA	5 cut(s)	25, 56, 91, 411, 929
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	227, 406, 466
MluCI	AATT	5 cut(s)	39, 172, 366, 675, 689
MlyI	GAGTC	2 cut(s)	410, 426
MnlI	CCTC	7 cut(s)	199, 202, 382, 640, 652, 657, 918
MseI	TTAA	3 cut(s)	162, 276, 864
MslI	CAYNNNNRTG	4 cut(s)	24, 144, 885, 939
MspA1I	CMGCKG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	837, 846, 849, 855, 981
NdeII	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
NlaIII	CATG	7 cut(s)	23, 124, 205, 334, 410, 890, 944
NlaIV	GGNNCC	1 cut(s)	224
NspI	RCATGY	2 cut(s)	23, 890
PagI	TCATGA	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	584, 895, 949
PkrI	GCNGC	6 cut(s)	486, 502, 753, 842, 851, 932
PleI	GAGTC	2 cut(s)	410, 426
PpsI	GAGTC	2 cut(s)	410, 426
Psp124BI	GAGCTC	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	820
PstI	CTGCAG	1 cut(s)	708
RsaI	GTAC	4 cut(s)	60, 87, 195, 552
RsaNI	GTAC	4 cut(s)	59, 86, 194, 551
RseI	CAYNNNNRTG	4 cut(s)	24, 144, 885, 939
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	162, 276, 864
SatI	GCNGC	6 cut(s)	485, 501, 752, 841, 850, 931
Sau3AI	GATC	7 cut(s)	106, 262, 607, 700, 714, 733, 791
Sau96I	GGNCC	1 cut(s)	820
ScaI	AGTACT	2 cut(s)	60, 195
SchI	GAGTC	2 cut(s)	410, 426
SduI	GDGCHC	3 cut(s)	227, 406, 466
SfaNI	GCATC	2 cut(s)	172, 867
SfcI	CTRYAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	4 cut(s)	24, 144, 885, 939
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	5 cut(s)	39, 172, 366, 675, 689
SsiI	CCGC	5 cut(s)	112, 500, 838, 850, 928
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	512, 538, 773
TaqI	TCGA	6 cut(s)	11, 285, 309, 717, 768, 910
TasI	AATT	5 cut(s)	39, 172, 366, 675, 689
TatI	WGTACW	4 cut(s)	58, 85, 193, 550
TauI	GCSGC	2 cut(s)	503, 852
TfiI	GAWTC	3 cut(s)	584, 895, 949
Tru1I	TTAA	3 cut(s)	162, 276, 864
Tru9I	TTAA	3 cut(s)	162, 276, 864
TscAI	CASTG	2 cut(s)	363, 517
TseI	GCWGC	4 cut(s)	484, 751, 840, 930
TspDTI	ATGAA	4 cut(s)	21, 319, 702, 929
TspRI	CASTG	2 cut(s)	363, 517
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	820
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	2 cut(s)	23, 890
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	2 cut(s)	60, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.