Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

14469704 .. 14473945

Gene Structure 4242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCCGAGTACAAAAGCACATTGGGACTTGTAAAGATCATTGATTTCTCGAGCAACAGATTAGATGGGGAGATTCCTCGTCAAATCACCGATCTAATTGGATTGGTTTCTTTAAATCTATCAAGAAACTCTCTAACGTGTCAAATGCCTCCTCAAATTGGGAAGTTGCGGTCGTTAGATTTCCTCGATTTGTCAAGAAACCATATACATGGAAGAATCCCTACAAGCCTTTCTCGGATAAATGGTCTTGGTGTCTTGGACTTGGCTGCTGCAACTGCACTGTTGAAGAGAAACGTTGATGGTTCACTGCCAATTGAAGATTTCAACATAGTACTTGATGATCAGGGTGGGAAGAAAGTACAAATGGGATTGGAGACTGATCAGCGAGGCATCAACTGTCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAAGACTCCTTCAGGCAGGTCGCTATCCAGAGTGTACTATCTCTCTGAATGTTTGTCTACACTAAGTAGGTCTACTTACTTTGTTGATTCTGATTATAGATATTTGAGACTGGAGCTGCTGGAAGGGTGGTGGCGTATCAGTGGCCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGCACAAGAGAAGTTCAGCCAGGTAATTGGAAAGGGGAAGGGCCATCTTCAGGTGCTGAATGAATCTCTATCTCTTATGATGAGCATCGGCTTCAGAGAACGAGATGCAAAAAGGGCAGTGAGGATGAGCAATCAAGATCAACATCTTGAATCAAGGAAAAGTAAACGACATTGCTGGGCAGTAGATGATTCAGTTGAAGCTCTTTCGGAGGTCCTTCAACGTCTAGATGCATCAGAGCCTGATGGAGAAATGGAAGGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCCTTCACTGACTATGACGTTGAAGTTTCTAGAGAAGGTGAAGCCATAAGTGAATTCTTGGCTCTACTGAATTCAGCGCGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

343

Amino Acids

38.26

Weight (kDa)

6.14

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	12 - 69	6.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AccI	GTMKAC	2 cut(s)	533, 548
AccII	CGCG	1 cut(s)	1021
AciI	CCGC	1 cut(s)	169
AclI	AACGTT	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	3 cut(s)	414, 995, 1012
AcuI	CTGAAG	4 cut(s)	471, 686, 730, 942
AfaI	GTAC	4 cut(s)	11, 333, 360, 512
AfiI	CCNNNNNNNGG	2 cut(s)	158, 703
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	8 cut(s)	286, 317, 325, 446, 803, 851, 872, 965
AjnI	CCWGG	2 cut(s)	621, 672
AluBI	AGCT	3 cut(s)	452, 592, 854
AluI	AGCT	3 cut(s)	452, 592, 854
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	368, 404, 577
AlwNI	CAGNNNCTG	2 cut(s)	709, 893
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	619, 694, 910
ApeKI	GCWGC	3 cut(s)	266, 269, 592
ApoI	RAATTY	3 cut(s)	414, 995, 1012
AspLEI	GCGC	1 cut(s)	1021
AspS9I	GGNCC	2 cut(s)	694, 865
AsuHPI	GGTGA	2 cut(s)	79, 992
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	865
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	3 cut(s)	253, 256, 579
BccI	CCATC	4 cut(s)	59, 293, 705, 890
BciT130I	CCWGG	2 cut(s)	623, 674
BclI	TGATCA	2 cut(s)	340, 379
BcoDI	GTCTC	3 cut(s)	368, 404, 577
BfaI	CTAG	3 cut(s)	878, 929, 972
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	267, 270, 593
BlsI	GCNGC	3 cut(s)	268, 271, 594
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	623, 674
Bme18I	GGWCC	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	694, 865
BmrFI	CCNGG	2 cut(s)	623, 674
BmsI	GCATC	6 cut(s)	399, 747, 748, 871, 893, 931
BpmI	CTGGAG	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	2 cut(s)	737, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 703
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	823
Bse8I	GATNNNNATC	2 cut(s)	737, 795
BseBI	CCWGG	2 cut(s)	623, 674
BseGI	GGATG	1 cut(s)	783
BseJI	GATNNNNATC	2 cut(s)	737, 795
BseLI	CCNNNNNNNGG	2 cut(s)	158, 703
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	253, 256, 579
BseYI	CCCAGC	1 cut(s)	828
BsgI	GTGCAG	2 cut(s)	261, 639
Bsh1236I	CGCG	1 cut(s)	1021
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	621, 696, 912
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	158, 703
BsmAI	GTCTC	3 cut(s)	368, 404, 577
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	621, 696, 912
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	5 cut(s)	36, 91, 340, 379, 790
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	3 cut(s)	621, 696, 912
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	1021
BspMI	ACCTGC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	823
BsrI	ACTGG	1 cut(s)	591
BssMI	GATC	5 cut(s)	36, 91, 340, 379, 790
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	623, 674
Bst4CI	ACNGT	2 cut(s)	282, 398
Bst6I	CTCTTC	2 cut(s)	281, 472
BstDEI	CTNAG	2 cut(s)	403, 539
BstF5I	GGATG	1 cut(s)	783
BstFNI	CGCG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	1021
BstKTI	GATC	5 cut(s)	39, 94, 343, 382, 793
BstMAI	GTCTC	3 cut(s)	368, 404, 577
BstMBI	GATC	5 cut(s)	36, 91, 340, 379, 790
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 767
BstNI	CCWGG	2 cut(s)	623, 674
BstSCI	CCNGG	2 cut(s)	621, 672
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	3 cut(s)	253, 256, 579
BstXI	CCANNNNNNTGG	2 cut(s)	209, 680
BsuRI	GGCC	3 cut(s)	621, 696, 912
BtsCI	GGATG	1 cut(s)	783
BtsI	GCAGTG	2 cut(s)	305, 777
BtsIMutI	CAGTG	6 cut(s)	278, 305, 411, 622, 777, 948
BveI	ACCTGC	1 cut(s)	483
CaiI	CAGNNNCTG	2 cut(s)	709, 893
CfoI	GCGC	1 cut(s)	1021
Cfr13I	GGNCC	2 cut(s)	694, 865
Csp6I	GTAC	4 cut(s)	10, 332, 359, 511
CviAII	CATG	2 cut(s)	209, 455
CviQI	GTAC	4 cut(s)	10, 332, 359, 511
DdeI	CTNAG	2 cut(s)	403, 539
DpnI	GATC	5 cut(s)	38, 93, 342, 381, 792
DpnII	GATC	5 cut(s)	36, 91, 340, 379, 790
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	281, 472
EarI	CTCTTC	2 cut(s)	281, 472
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	4 cut(s)	471, 686, 730, 942
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRI	GAATTC	3 cut(s)	414, 995, 1012
EcoRII	CCWGG	2 cut(s)	621, 672
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	212, 458
FaiI	YATR	9 cut(s)	204, 206, 210, 329, 456, 573, 731, 957, 989
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	208, 454
FbaI	TGATCA	2 cut(s)	340, 379
FblI	GTMKAC	2 cut(s)	533, 548
Fnu4HI	GCNGC	3 cut(s)	267, 270, 593
FokI	GGATG	1 cut(s)	790
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	267, 270, 593
FspBI	CTAG	3 cut(s)	878, 929, 972
GlaI	GCGC	1 cut(s)	1020
GluI	GCNGC	3 cut(s)	267, 270, 593
GsaI	CCCAGC	1 cut(s)	832
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	3 cut(s)	621, 696, 912
HhaI	GCGC	1 cut(s)	1021
Hin1II	CATG	2 cut(s)	212, 458
Hin6I	GCGC	1 cut(s)	1019
HinP1I	GCGC	1 cut(s)	1019
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	8 cut(s)	73, 216, 464, 481, 563, 716, 803, 842
HphI	GGTGA	2 cut(s)	79, 992
Hpy166II	GTNNAC	6 cut(s)	305, 511, 534, 549, 648, 818
Hpy188I	TCNGA	7 cut(s)	7, 237, 523, 568, 749, 862, 889
Hpy188III	TCNNGA	9 cut(s)	49, 123, 195, 443, 504, 788, 800, 878, 972
Hpy8I	GTNNAC	6 cut(s)	305, 511, 534, 549, 648, 818
HpyAV	CCTTC	9 cut(s)	431, 495, 593, 634, 685, 878, 902, 955, 971
HpyCH4III	ACNGT	2 cut(s)	282, 398
HpyCH4IV	ACGT	4 cut(s)	137, 294, 874, 960
HpyCH4V	TGCA	5 cut(s)	272, 278, 656, 761, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 767
HpyF3I	CTNAG	2 cut(s)	403, 539
HpySE526I	ACGT	4 cut(s)	137, 294, 874, 960
Hsp92II	CATG	2 cut(s)	212, 458
HspAI	GCGC	1 cut(s)	1019
Ksp22I	TGATCA	2 cut(s)	340, 379
Kzo9I	GATC	5 cut(s)	36, 91, 340, 379, 790
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	3 cut(s)	253, 256, 579
LweI	GCATC	6 cut(s)	399, 747, 748, 871, 893, 931
MaeI	CTAG	3 cut(s)	878, 929, 972
MaeII	ACGT	4 cut(s)	137, 294, 874, 960
MalI	GATC	5 cut(s)	38, 93, 342, 381, 792
MboI	GATC	5 cut(s)	36, 91, 340, 379, 790
MboII	GAAGA	7 cut(s)	225, 298, 329, 364, 459, 692, 935
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	7 cut(s)	96, 156, 312, 414, 678, 995, 1012
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	458, 475
MnlI	CCTC	7 cut(s)	87, 159, 162, 194, 380, 768, 856
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	2 cut(s)	113, 477
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	623, 674
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	623, 674
MvnI	CGCG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	2 cut(s)	275, 767
NdeII	GATC	5 cut(s)	36, 91, 340, 379, 790
NlaIII	CATG	2 cut(s)	212, 458
NsiI	ATGCAT	1 cut(s)	886
PaeR7I	CTCGAG	1 cut(s)	49
PfeI	GAWTC	6 cut(s)	73, 216, 563, 716, 803, 842
PkrI	GCNGC	3 cut(s)	268, 271, 594
PleI	GAGTC	2 cut(s)	458, 475
PpsI	GAGTC	2 cut(s)	458, 475
PpuMI	RGGWCCY	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	454
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	2 cut(s)	621, 672
PspFI	CCCAGC	1 cut(s)	828
PspGI	CCWGG	2 cut(s)	621, 672
PspPI	GGNCC	2 cut(s)	694, 865
PspPPI	RGGWCCY	1 cut(s)	865
PstNI	CAGNNNCTG	2 cut(s)	709, 893
RsaI	GTAC	4 cut(s)	11, 333, 360, 512
RsaNI	GTAC	4 cut(s)	10, 332, 359, 511
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	113, 477
SatI	GCNGC	3 cut(s)	267, 270, 593
Sau3AI	GATC	5 cut(s)	36, 91, 340, 379, 790
Sau96I	GGNCC	2 cut(s)	694, 865
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	2 cut(s)	458, 475
ScrFI	CCNGG	2 cut(s)	623, 674
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	6 cut(s)	399, 747, 748, 871, 893, 931
Sfr274I	CTCGAG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	865
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	49, 422
SmoI	CTYRAG	2 cut(s)	49, 422
Sse9I	AATT	7 cut(s)	96, 156, 312, 414, 678, 995, 1012
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	3 cut(s)	878, 929, 972
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	621, 672
TaaI	ACNGT	2 cut(s)	282, 398
TaiI	ACGT	4 cut(s)	140, 297, 877, 963
TaqI	TCGA	2 cut(s)	50, 186
TasI	AATT	7 cut(s)	96, 156, 312, 414, 678, 995, 1012
TatI	WGTACW	4 cut(s)	9, 331, 358, 510
TfiI	GAWTC	6 cut(s)	73, 216, 563, 716, 803, 842
Tru1I	TTAA	2 cut(s)	113, 477
Tru9I	TTAA	2 cut(s)	113, 477
TscAI	CASTG	6 cut(s)	285, 312, 411, 622, 777, 955
TseI	GCWGC	3 cut(s)	266, 269, 592
TspDTI	ATGAA	2 cut(s)	653, 729
TspRI	CASTG	6 cut(s)	285, 312, 411, 622, 777, 955
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	3 cut(s)	414, 995, 1012
XbaI	TCTAGA	2 cut(s)	877, 971
XhoI	CTCGAG	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	533, 548
XspI	CTAG	3 cut(s)	878, 929, 972
ZrmI	AGTACT	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.