Rw6G005990

NEDD8 ultimate buster

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
9603230 .. 9605998
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005990.1

Sequence Viewer

Length: 1260 bp
ATGGACTTTTCTCAGCACTTGCTGCTGGATTATCTACAAAACCAATCATGGACAAAAAAGTTCAATTCCAATTGTATGTATATGAACGATGAGAGAGAGAGAGAGAGAGAGAGAAGATTGTACCTCTTGGACGGCTCGGTTCGCCAGGGGGCTGCTCCAACTGCGCTTTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAGGTACAAATGGGATCGGAGACTGATCAGCGATTTGAAATGTTGTTTGACGGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTATAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTCTACGATCCATTGGTTATTAAGGTGATTGACTGGTCAATAATCCTTCTATACTGCAAATCGATATGGTTTAGTGTTAATTATTTCATGCTTAGAGACATAAACTGGCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAGGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGACGGTGTTGACTTCTGCACAAGAGAAGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTCTCTCTTGTGATGATCATGGACTTCAGAGAACGAGATACAAAAAGGGCACTTGGGATGAGCAATCAAGATTTTCTTGACTTTGCAGGTTTGAAAAGGAGCTTGCTGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCCTGAATCAAGGAAAAGTAAACTACAGTACCAAGCAGTAGATGCTTCAGTTGAAGATTTTGTACGCATGGCCTTTGACAGATCATTAGATGCTGCTGACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAGTGCTTGATAATCAAAATGGTCAAGTTGGAGGTTCTTCAACGTCTAGTAATGCTTCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCTCTGACTATGATCGATATTGA

Protein Analysis

419

Amino Acids

47.53

Weight (kDa)

4.75

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000694)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 593, 827
AciI CCGC 1 cut(s) 659
AclWI GGATC 2 cut(s) 262, 404
AcsI RAATTY 2 cut(s) 525, 1108
AcuI CTGAAG 7 cut(s) 581, 716, 760, 881, 969, 1161, 1233
AfaI GTAC 5 cut(s) 122, 219, 246, 968, 1002
AfiI CCNNNNNNNGG 2 cut(s) 733, 1045
AgsI TTSAA 9 cut(s) 64, 203, 211, 224, 278, 557, 844, 992, 1161
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 4 cut(s) 563, 643, 730, 852
AluI AGCT 4 cut(s) 563, 643, 730, 852
Alw21I GWGCWC 3 cut(s) 378, 565, 625
Alw26I GTCTC 4 cut(s) 169, 254, 492, 908
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 2 cut(s) 262, 404
AlwNI CAGNNNCTG 1 cut(s) 739
AoxI GGCC 1 cut(s) 1008
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 5 cut(s) 22, 152, 643, 856, 1031
ApoI RAATTY 2 cut(s) 525, 1108
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 439, 715
AsuII TTCGAA 1 cut(s) 170
BaeGI GKGCMC 2 cut(s) 625, 802
BaeI ACNNNNGTAYC 2 cut(s) 950, 983
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
BauI CACGAG 1 cut(s) 582
Bbv12I GWGCWC 3 cut(s) 378, 565, 625
BbvI GCAGC 5 cut(s) 9, 139, 630, 843, 1018
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 2 cut(s) 265, 765
BcoDI GTCTC 4 cut(s) 169, 254, 492, 908
BfaI CTAG 2 cut(s) 1167, 1220
BfmI CTRYAG 2 cut(s) 962, 1056
BfuAI ACCTGC 2 cut(s) 593, 827
BisI GCNGC 6 cut(s) 23, 153, 644, 660, 857, 1032
BlpI GCTNAGC 1 cut(s) 377
BlsI GCNGC 6 cut(s) 24, 154, 645, 661, 858, 1033
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 4 cut(s) 352, 970, 1018, 1222
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 659
Bpu1102I GCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 554
Bsa29I ATCGAT 2 cut(s) 464, 1252
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 733, 1045
Bse1I ACTGG 3 cut(s) 440, 512, 642
Bse3DI GCAATG 3 cut(s) 191, 372, 1101
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 2 cut(s) 464, 1252
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 3 cut(s) 748, 813, 937
BseLI CCNNNNNNNGG 2 cut(s) 733, 1045
BseMI GCAATG 3 cut(s) 191, 372, 1101
BseMII CTCAG 4 cut(s) 26, 391, 528, 1035
BseNI ACTGG 3 cut(s) 440, 512, 642
BseRI GAGGAG 2 cut(s) 401, 404
BseSI GKGCMC 2 cut(s) 625, 802
BseXI GCAGC 5 cut(s) 9, 139, 630, 843, 1018
BseYI CCCAGC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 1 cut(s) 1010
BshVI ATCGAT 2 cut(s) 464, 1252
BsiHKAI GWGCWC 3 cut(s) 378, 565, 625
BslI CCNNNNNNNGG 2 cut(s) 733, 1045
BsmAI GTCTC 4 cut(s) 169, 254, 492, 908
BsnI GGCC 1 cut(s) 1010
Bso31I GGTCTC 1 cut(s) 908
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 378, 565, 625, 802
Bsp143I GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
Bsp1720I GCTNAGC 1 cut(s) 377
BspACI CCGC 1 cut(s) 659
BspANI GGCC 1 cut(s) 1010
BspCNI CTCAG 4 cut(s) 25, 390, 527, 1036
BspDI ATCGAT 2 cut(s) 464, 1252
BspHI TCATGA 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 2 cut(s) 593, 827
BspPI GGATC 2 cut(s) 262, 404
BspT104I TTCGAA 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 3 cut(s) 191, 372, 1101
BsrI ACTGG 3 cut(s) 440, 512, 642
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 4 cut(s) 671, 697, 883, 966
Bst6I CTCTTC 2 cut(s) 167, 583
BstAPI GCANNNNNTGC 4 cut(s) 22, 980, 1055, 1064
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 621, 854
BstDEI CTNAG 5 cut(s) 12, 377, 494, 514, 1044
BstF5I GGATG 3 cut(s) 748, 813, 937
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 6 cut(s) 257, 268, 412, 768, 1022, 1252
BstMAI GTCTC 4 cut(s) 169, 254, 492, 908
BstMBI GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
BstMWI GCNNNNNNNGC 8 cut(s) 22, 141, 161, 736, 862, 980, 1055, 1064
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 2 cut(s) 962, 1056
BstSLI GKGCMC 2 cut(s) 625, 802
BstV1I GCAGC 5 cut(s) 9, 139, 630, 843, 1018
Bsu15I ATCGAT 2 cut(s) 464, 1252
BsuRI GGCC 1 cut(s) 1010
BsuTUI ATCGAT 2 cut(s) 464, 1252
BtsCI GGATG 3 cut(s) 748, 813, 937
BtsIMutI CAGTG 4 cut(s) 522, 676, 888, 1128
BveI ACCTGC 2 cut(s) 593, 827
Cac8I GCNNGC 2 cut(s) 621, 854
CaiI CAGNNNCTG 1 cut(s) 739
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 166
ClaI ATCGAT 2 cut(s) 464, 1252
CseI GACGC 1 cut(s) 1107
Csp6I GTAC 5 cut(s) 121, 218, 245, 967, 1001
CviAII CATG 8 cut(s) 48, 179, 301, 382, 490, 566, 769, 1006
CviQI GTAC 5 cut(s) 121, 218, 245, 967, 1001
DdeI CTNAG 5 cut(s) 12, 377, 494, 514, 1044
DpnI GATC 6 cut(s) 256, 267, 411, 767, 1021, 1251
DpnII GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
Eam1104I CTCTTC 2 cut(s) 167, 583
EarI CTCTTC 2 cut(s) 167, 583
Ecl136II GAGCTC 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 563
Eco57I CTGAAG 7 cut(s) 581, 716, 760, 881, 969, 1161, 1233
EcoICRI GAGCTC 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 565
FaeI CATG 8 cut(s) 51, 182, 304, 385, 493, 569, 772, 1009
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FatI CATG 8 cut(s) 47, 178, 300, 381, 489, 565, 768, 1005
FbaI TGATCA 2 cut(s) 265, 765
Fnu4HI GCNGC 6 cut(s) 23, 153, 644, 660, 857, 1032
FokI GGATG 3 cut(s) 755, 820, 924
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 6 cut(s) 23, 153, 644, 660, 857, 1032
FspBI CTAG 2 cut(s) 1167, 1220
GlaI GCGC 1 cut(s) 165
GluI GCNGC 6 cut(s) 23, 153, 644, 660, 857, 1032
GsaI CCCAGC 1 cut(s) 730
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 1 cut(s) 1010
HgaI GACGC 1 cut(s) 1107
HhaI GCGC 1 cut(s) 166
Hin1II CATG 8 cut(s) 51, 182, 304, 385, 493, 569, 772, 1009
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HinfI GANTC 5 cut(s) 575, 591, 746, 944, 1187
HphI GGTGA 2 cut(s) 439, 715
Hpy166II GTNNAC 4 cut(s) 623, 702, 723, 959
Hpy188I TCNGA 8 cut(s) 231, 259, 779, 1045, 1087, 1180, 1192, 1243
Hpy188III TCNNGA 7 cut(s) 301, 554, 614, 818, 827, 911, 941
Hpy8I GTNNAC 4 cut(s) 623, 702, 723, 959
HpyAV CCTTC 5 cut(s) 235, 458, 605, 644, 883
HpyCH4III ACNGT 4 cut(s) 671, 697, 883, 966
HpyCH4IV ACGT 1 cut(s) 1163
HpyCH4V TGCA 9 cut(s) 329, 365, 459, 623, 710, 836, 1058, 1094, 1106
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 141, 161, 736, 862, 980, 1055, 1064
HpyF3I CTNAG 5 cut(s) 12, 377, 494, 514, 1044
HpySE526I ACGT 1 cut(s) 1163
Hsp92II CATG 8 cut(s) 51, 182, 304, 385, 493, 569, 772, 1009
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 265, 765
Kzo9I GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
LmnI GCTCC 3 cut(s) 160, 640, 849
Lsp1109I GCAGC 5 cut(s) 9, 139, 630, 843, 1018
LweI GCATC 4 cut(s) 352, 970, 1018, 1222
MaeI CTAG 2 cut(s) 1167, 1220
MaeII ACGT 1 cut(s) 1163
MaeIII GTNAC 1 cut(s) 315
MalI GATC 6 cut(s) 256, 267, 411, 767, 1021, 1251
MboI GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
MboII GAAGA 9 cut(s) 126, 184, 215, 250, 570, 915, 1004, 1149, 1226
MfeI CAATTG 3 cut(s) 70, 198, 1095
MhlI GDGCHC 4 cut(s) 378, 565, 625, 802
MlyI GAGTC 2 cut(s) 569, 585
MmeI TCCRAC 2 cut(s) 182, 1129
MnlI CCTC 8 cut(s) 134, 379, 382, 385, 541, 865, 1039, 1145
MseI TTAA 2 cut(s) 423, 480
MslI CAYNNNNRTG 2 cut(s) 183, 324
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 3 cut(s) 70, 198, 1095
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 8 cut(s) 22, 141, 161, 736, 862, 980, 1055, 1064
NdeII GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
NlaIII CATG 8 cut(s) 51, 182, 304, 385, 493, 569, 772, 1009
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 170
PagI TCATGA 1 cut(s) 300
PfeI GAWTC 3 cut(s) 746, 944, 1187
PkrI GCNGC 6 cut(s) 24, 154, 645, 661, 858, 1033
PleI GAGTC 2 cut(s) 569, 585
PpsI GAGTC 2 cut(s) 569, 585
Psp124BI GAGCTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 1 cut(s) 144
PstI CTGCAG 1 cut(s) 1060
PstNI CAGNNNCTG 1 cut(s) 739
RsaI GTAC 5 cut(s) 122, 219, 246, 968, 1002
RsaNI GTAC 5 cut(s) 121, 218, 245, 967, 1001
RseI CAYNNNNRTG 2 cut(s) 183, 324
SacI GAGCTC 1 cut(s) 565
SaqAI TTAA 2 cut(s) 423, 480
SatI GCNGC 6 cut(s) 23, 153, 644, 660, 857, 1032
Sau3AI GATC 6 cut(s) 254, 265, 409, 765, 1019, 1249
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 2 cut(s) 569, 585
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 4 cut(s) 378, 565, 625, 802
SfaNI GCATC 4 cut(s) 352, 970, 1018, 1222
SfcI CTRYAG 2 cut(s) 962, 1056
SfuI TTCGAA 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 183, 324
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SsiI CCGC 1 cut(s) 659
SspMI CTAG 2 cut(s) 1167, 1220
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 4 cut(s) 671, 697, 883, 966
TaiI ACGT 1 cut(s) 1166
TaqI TCGA 3 cut(s) 170, 464, 1252
TatI WGTACW 1 cut(s) 217
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 3 cut(s) 746, 944, 1187
Tru1I TTAA 2 cut(s) 423, 480
Tru9I TTAA 2 cut(s) 423, 480
TscAI CASTG 4 cut(s) 522, 676, 888, 1128
TseI GCWGC 5 cut(s) 22, 152, 643, 856, 1031
TspDTI ATGAA 4 cut(s) 98, 180, 478, 759
TspRI CASTG 4 cut(s) 522, 676, 888, 1128
VneI GTGCAC 1 cut(s) 621
XapI RAATTY 2 cut(s) 525, 1108
XceI RCATGY 1 cut(s) 182
XspI CTAG 2 cut(s) 1167, 1220
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.