Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010665.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

53737 .. 56935

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010665.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggtttggtgttatttcatgcttagagacatcaactggctctcagtggcaagaattcgccttgagaaagccaaagaaggtcttgaacgagctcatggaaaggactcttctcgtgttagactccttcaggcgggtcctccgttgctcgaagacggtgaagagaatcagcctcttcgttctcctccttcgacaaaaaccatcctcctcttcgttctccgcctccgaccacaaccctcctcctcgtcttcgttcttcagctacaatcacaacccaacccgacccgcctcgtcctccttctttttagcctcggaccagctcctctactcgaagacggtgaagagaatcagagatagaggccggccttttggagaaaatttgagcttttgtgtcatagctgtttgtgtccctcagtccatcgagtccctcgctctatttcccactataaatcaaacgcacatcccctacaatggggactccaccatttcaatcaaggcccctttccctctgctctggtgtcctgtgaacccaactaaacgacaccctcgtcatgtcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

9.9

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	543
AciI	CCGC	3 cut(s)	131, 217, 282
AcsI	RAATTY	2 cut(s)	54, 373
AcuI	CTGAAG	2 cut(s)	110, 238
AfiI	CCNNNNNNNGG	3 cut(s)	130, 467, 468
AgsI	TTSAA	2 cut(s)	86, 486
AluBI	AGCT	5 cut(s)	92, 258, 316, 381, 395
AluI	AGCT	5 cut(s)	92, 258, 316, 381, 395
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	3 cut(s)	355, 359, 492
ApoI	RAATTY	2 cut(s)	54, 373
AspS9I	GGNCC	3 cut(s)	134, 310, 493
AsuHPI	GGTGA	2 cut(s)	167, 346
AvaII	GGWCC	2 cut(s)	134, 310
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	3 cut(s)	156, 237, 335
Bbv12I	GWGCWC	1 cut(s)	94
BccI	CCATC	2 cut(s)	206, 422
BcoDI	GTCTC	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	134, 310
BmgT120I	GGNCC	3 cut(s)	134, 310, 493
BmiI	GGNNCC	2 cut(s)	135, 495
BpiI	GAAGAC	3 cut(s)	156, 237, 335
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 467, 468
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	198, 456
BseLI	CCNNNNNNNGG	3 cut(s)	130, 467, 468
BseMII	CTCAG	2 cut(s)	57, 422
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	5 cut(s)	171, 194, 226, 229, 308
BshFI	GGCC	3 cut(s)	357, 361, 494
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	3 cut(s)	389, 406, 485
BslI	CCNNNNNNNGG	3 cut(s)	130, 467, 468
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	3 cut(s)	389, 406, 485
BsnI	GGCC	3 cut(s)	357, 361, 494
Bsp1286I	GDGCHC	1 cut(s)	94
BspACI	CCGC	3 cut(s)	131, 217, 282
BspANI	GGCC	3 cut(s)	357, 361, 494
BspCNI	CTCAG	2 cut(s)	56, 421
BspLI	GGNNCC	2 cut(s)	135, 495
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	155, 334
Bst6I	CTCTTC	5 cut(s)	112, 153, 177, 212, 332
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	23, 43, 408
BstF5I	GGATG	2 cut(s)	198, 456
BstMAI	GTCTC	1 cut(s)	21
BstV2I	GAAGAC	3 cut(s)	156, 237, 335
BsuRI	GGCC	3 cut(s)	357, 361, 494
BtsCI	GGATG	2 cut(s)	198, 456
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	134, 310, 493
CviAII	CATG	3 cut(s)	19, 95, 548
DdeI	CTNAG	3 cut(s)	23, 43, 408
DrdI	GACNNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	543
Eam1104I	CTCTTC	5 cut(s)	112, 153, 177, 212, 332
EarI	CTCTTC	5 cut(s)	112, 153, 177, 212, 332
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	134, 310
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	110, 238
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	134, 493
EcoRI	GAATTC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	3 cut(s)	22, 98, 551
FaiI	YATR	5 cut(s)	20, 96, 392, 443, 549
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	3 cut(s)	389, 406, 485
FatI	CATG	3 cut(s)	18, 94, 547
FauI	CCCGC	2 cut(s)	124, 289
FokI	GGATG	2 cut(s)	185, 443
FriOI	GRGCYC	1 cut(s)	94
FseI	GGCCGGCC	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	357, 361, 494
HapII	CCGG	1 cut(s)	358
Hin1II	CATG	3 cut(s)	22, 98, 551
HinfI	GANTC	6 cut(s)	104, 120, 163, 342, 419, 473
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	2 cut(s)	167, 346
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	224, 310, 347
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	4 cut(s)	71, 134, 195, 304
HpyCH4III	ACNGT	2 cut(s)	155, 334
HpyF3I	CTNAG	3 cut(s)	23, 43, 408
Hsp92II	CATG	3 cut(s)	22, 98, 551
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	22, 113, 326, 371, 496, 531
MboII	GAAGA	9 cut(s)	99, 161, 164, 170, 199, 237, 244, 340, 349
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	3 cut(s)	54, 373, 553
MlyI	GAGTC	4 cut(s)	98, 114, 428, 467
MmeI	TCCRAC	1 cut(s)	247
MroNI	GCCGGC	1 cut(s)	357
MseI	TTAA	1 cut(s)	556
MspI	CCGG	1 cut(s)	358
NaeI	GCCGGC	1 cut(s)	359
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	3 cut(s)	22, 98, 551
NlaIV	GGNNCC	2 cut(s)	135, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	163, 342
PleI	GAGTC	4 cut(s)	98, 114, 427, 467
PpsI	GAGTC	4 cut(s)	98, 114, 427, 467
PpuMI	RGGWCCY	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	135, 495
PspPI	GGNCC	3 cut(s)	134, 310, 493
PspPPI	RGGWCCY	1 cut(s)	134
RigI	GGCCGGCC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	556
Sau96I	GGNCC	3 cut(s)	134, 310, 493
SchI	GAGTC	4 cut(s)	98, 114, 428, 467
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	6 cut(s)	82, 94, 260, 318, 383, 397
SinI	GGWCC	2 cut(s)	134, 310
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	54, 373, 553
SsiI	CCGC	3 cut(s)	131, 217, 282
SstI	GAGCTC	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	155, 334
TaqI	TCGA	4 cut(s)	147, 188, 326, 417
TasI	AATT	3 cut(s)	54, 373, 553
TfiI	GAWTC	2 cut(s)	163, 342
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	134, 310
XapI	RAATTY	2 cut(s)	54, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.