Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

1819799 .. 1820146

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

115

Amino Acids

11.97

Weight (kDa)

4.05

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	133, 328
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	186, 281
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	133, 328
AspS9I	GGNCC	2 cut(s)	4, 179
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	4, 179
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	192, 245, 288
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	4, 179
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	4, 179
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	3 cut(s)	43, 209, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	126
BstAPI	GCANNNNNTGC	2 cut(s)	80, 89
BstDEI	CTNAG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 89
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	20, 264
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	4, 179
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	313
CviJI	RGCY	2 cut(s)	228, 320
CviKI_1	RGCY	2 cut(s)	228, 320
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	4, 179
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	202
FaiI	YATR	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	45
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	192, 245, 288
GluI	GCNGC	1 cut(s)	57
HgaI	GACGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	70, 112, 205, 217
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	83, 119, 131, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 89
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	188
LpnPI	CCDG	2 cut(s)	20, 93
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	3 cut(s)	43, 209, 247
MaeI	CTAG	3 cut(s)	192, 245, 288
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	251
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	4 cut(s)	75, 120, 133, 328
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	64, 170
Mph1103I	ATGCAT	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	80, 89
NlaIV	GGNNCC	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	4, 179
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	4, 179
ScaI	AGTACT	1 cut(s)	314
SetI	ASST	3 cut(s)	181, 191, 298
SfaNI	GCATC	3 cut(s)	43, 209, 247
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	4, 179
Sse9I	AATT	4 cut(s)	75, 120, 133, 328
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	192, 245, 288
TaiI	ACGT	1 cut(s)	191
TasI	AATT	4 cut(s)	75, 120, 133, 328
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	27, 271
TseI	GCWGC	1 cut(s)	56
TspRI	CASTG	2 cut(s)	27, 271
VpaK11BI	GGWCC	2 cut(s)	4, 179
XapI	RAATTY	2 cut(s)	133, 328
XspI	CTAG	3 cut(s)	192, 245, 288
ZrmI	AGTACT	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.