NEDD8 ultimate buster
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AFT | PF08731 | 32 - 133 | 2.6e-06 | Transcription factor AFT |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 228 |
| AccI | GTMKAC | 2 cut(s) | 39, 289 |
| AccII | CGCG | 2 cut(s) | 447, 738 |
| AciI | CCGC | 1 cut(s) | 228 |
| AcsI | RAATTY | 3 cut(s) | 74, 384, 607 |
| AfaI | GTAC | 4 cut(s) | 52, 67, 647, 775 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 331, 414, 415, 416, 549 |
| AgsI | TTSAA | 4 cut(s) | 97, 572, 580, 867 |
| AhlI | ACTAGT | 3 cut(s) | 68, 671, 875 |
| AluBI | AGCT | 4 cut(s) | 343, 347, 367, 723 |
| AluI | AGCT | 4 cut(s) | 343, 347, 367, 723 |
| Alw21I | GWGCWC | 2 cut(s) | 514, 926 |
| Alw26I | GTCTC | 1 cut(s) | 83 |
| Alw44I | GTGCAC | 1 cut(s) | 922 |
| Ama87I | CYCGRG | 1 cut(s) | 410 |
| AoxI | GGCC | 2 cut(s) | 123, 418 |
| ApaLI | GTGCAC | 1 cut(s) | 922 |
| ApeKI | GCWGC | 2 cut(s) | 347, 398 |
| ApoI | RAATTY | 3 cut(s) | 74, 384, 607 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 238, 270, 677, 709 |
| AseI | ATTAAT | 1 cut(s) | 626 |
| AspLEI | GCGC | 1 cut(s) | 740 |
| AspS9I | GGNCC | 3 cut(s) | 123, 404, 418 |
| AsuHPI | GGTGA | 1 cut(s) | 347 |
| AsuII | TTCGAA | 1 cut(s) | 726 |
| AsuNHI | GCTAGC | 1 cut(s) | 343 |
| AvaI | CYCGRG | 1 cut(s) | 410 |
| AvaII | GGWCC | 1 cut(s) | 404 |
| BaeGI | GKGCMC | 1 cut(s) | 926 |
| Bbv12I | GWGCWC | 2 cut(s) | 514, 926 |
| BbvI | GCAGC | 2 cut(s) | 334, 410 |
| BccI | CCATC | 1 cut(s) | 233 |
| BceAI | ACGGC | 1 cut(s) | 792 |
| BcoDI | GTCTC | 1 cut(s) | 83 |
| BcuI | ACTAGT | 3 cut(s) | 68, 671, 875 |
| BfaI | CTAG | 5 cut(s) | 69, 201, 344, 672, 876 |
| BglII | AGATCT | 1 cut(s) | 170 |
| BisI | GCNGC | 2 cut(s) | 348, 399 |
| BlsI | GCNGC | 2 cut(s) | 349, 400 |
| BmcAI | AGTACT | 1 cut(s) | 67 |
| Bme18I | GGWCC | 1 cut(s) | 404 |
| BmeT110I | CYCGRG | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 3 cut(s) | 123, 404, 418 |
| BmiI | GGNNCC | 2 cut(s) | 406, 419 |
| BmrI | ACTGGG | 2 cut(s) | 370, 711 |
| BmtI | GCTAGC | 1 cut(s) | 347 |
| BmuI | ACTGGG | 2 cut(s) | 370, 711 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| Bpu14I | TTCGAA | 1 cut(s) | 726 |
| BpuEI | CTTGAG | 1 cut(s) | 617 |
| BsaWI | WCCGGW | 2 cut(s) | 296, 324 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 458, 488 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 331, 414, 415, 416, 549 |
| Bse1I | ACTGG | 2 cut(s) | 365, 717 |
| BseGI | GGATG | 2 cut(s) | 53, 607 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 331, 414, 415, 416, 549 |
| BseMII | CTCAG | 2 cut(s) | 78, 443 |
| BseNI | ACTGG | 2 cut(s) | 365, 717 |
| BseRI | GAGGAG | 2 cut(s) | 464, 656 |
| BseSI | GKGCMC | 1 cut(s) | 926 |
| BseXI | GCAGC | 2 cut(s) | 334, 410 |
| Bsh1236I | CGCG | 2 cut(s) | 447, 738 |
| BshFI | GGCC | 2 cut(s) | 125, 420 |
| BsiHKAI | GWGCWC | 2 cut(s) | 514, 926 |
| BsiHKCI | CYCGRG | 1 cut(s) | 410 |
| BsiSI | CCGG | 2 cut(s) | 297, 325 |
| BslFI | GGGAC | 2 cut(s) | 240, 698 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 331, 414, 415, 416, 549 |
| BsmAI | GTCTC | 1 cut(s) | 83 |
| BsmFI | GGGAC | 2 cut(s) | 240, 698 |
| BsnI | GGCC | 2 cut(s) | 125, 420 |
| BsoBI | CYCGRG | 1 cut(s) | 410 |
| Bsp119I | TTCGAA | 1 cut(s) | 726 |
| Bsp1286I | GDGCHC | 2 cut(s) | 514, 926 |
| Bsp1407I | TGTACA | 1 cut(s) | 50 |
| Bsp143I | GATC | 1 cut(s) | 170 |
| Bsp68I | TCGCGA | 1 cut(s) | 447 |
| BspACI | CCGC | 1 cut(s) | 228 |
| BspANI | GGCC | 2 cut(s) | 125, 420 |
| BspCNI | CTCAG | 2 cut(s) | 79, 442 |
| BspFNI | CGCG | 2 cut(s) | 447, 738 |
| BspLI | GGNNCC | 2 cut(s) | 406, 419 |
| BspOI | GCTAGC | 1 cut(s) | 347 |
| BspT104I | TTCGAA | 1 cut(s) | 726 |
| BsrBI | CCGCTC | 1 cut(s) | 228 |
| BsrGI | TGTACA | 1 cut(s) | 50 |
| BsrI | ACTGG | 2 cut(s) | 365, 717 |
| BssMI | GATC | 1 cut(s) | 170 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 888 |
| BstAUI | TGTACA | 1 cut(s) | 50 |
| BstBI | TTCGAA | 1 cut(s) | 726 |
| BstC8I | GCNNGC | 1 cut(s) | 345 |
| BstDEI | CTNAG | 3 cut(s) | 87, 429, 495 |
| BstF5I | GGATG | 2 cut(s) | 53, 607 |
| BstFNI | CGCG | 2 cut(s) | 447, 738 |
| BstHHI | GCGC | 1 cut(s) | 740 |
| BstKTI | GATC | 1 cut(s) | 173 |
| BstMAI | GTCTC | 1 cut(s) | 83 |
| BstMBI | GATC | 1 cut(s) | 170 |
| BstNSI | RCATGY | 1 cut(s) | 11 |
| BstSLI | GKGCMC | 1 cut(s) | 926 |
| BstUI | CGCG | 2 cut(s) | 447, 738 |
| BstV1I | GCAGC | 2 cut(s) | 334, 410 |
| BstX2I | RGATCY | 1 cut(s) | 170 |
| BstYI | RGATCY | 1 cut(s) | 170 |
| BsuRI | GGCC | 2 cut(s) | 125, 420 |
| BtsCI | GGATG | 2 cut(s) | 53, 607 |
| BtsI | GCAGTG | 1 cut(s) | 786 |
| BtsIMutI | CAGTG | 6 cut(s) | 49, 184, 776, 786, 920, 924 |
| BtuMI | TCGCGA | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 1 cut(s) | 345 |
| CfoI | GCGC | 1 cut(s) | 740 |
| Cfr13I | GGNCC | 3 cut(s) | 123, 404, 418 |
| Csp6I | GTAC | 4 cut(s) | 51, 66, 646, 774 |
| CviAII | CATG | 2 cut(s) | 8, 395 |
| CviJI | RGCY | 9 cut(s) | 14, 125, 343, 347, 367, 420, 493, 723, 854 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 125, 343, 347, 367, 420, 493, 723, 854 |
| CviQI | GTAC | 4 cut(s) | 51, 66, 646, 774 |
| DdeI | CTNAG | 3 cut(s) | 87, 429, 495 |
| DpnI | GATC | 1 cut(s) | 172 |
| DpnII | GATC | 1 cut(s) | 170 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 888 |
| EarI | CTCTTC | 2 cut(s) | 102, 888 |
| Eco47I | GGWCC | 1 cut(s) | 404 |
| Eco88I | CYCGRG | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 404 |
| EcoRI | GAATTC | 2 cut(s) | 74, 384 |
| FaeI | CATG | 2 cut(s) | 11, 398 |
| FaqI | GGGAC | 2 cut(s) | 240, 698 |
| FatI | CATG | 2 cut(s) | 7, 394 |
| FblI | GTMKAC | 2 cut(s) | 39, 289 |
| Fnu4HI | GCNGC | 2 cut(s) | 348, 399 |
| FokI | GGATG | 2 cut(s) | 60, 614 |
| Fsp4HI | GCNGC | 2 cut(s) | 348, 399 |
| FspBI | CTAG | 5 cut(s) | 69, 201, 344, 672, 876 |
| GlaI | GCGC | 1 cut(s) | 739 |
| GluI | GCNGC | 2 cut(s) | 348, 399 |
| HaeIII | GGCC | 2 cut(s) | 125, 420 |
| HapII | CCGG | 2 cut(s) | 297, 325 |
| HhaI | GCGC | 1 cut(s) | 740 |
| Hin1II | CATG | 2 cut(s) | 11, 398 |
| Hin6I | GCGC | 1 cut(s) | 738 |
| HinP1I | GCGC | 1 cut(s) | 738 |
| HincII | GTYRAC | 2 cut(s) | 290, 825 |
| HindII | GTYRAC | 2 cut(s) | 290, 825 |
| HinfI | GANTC | 1 cut(s) | 278 |
| HpaII | CCGG | 2 cut(s) | 297, 325 |
| HphI | GGTGA | 1 cut(s) | 347 |
| Hpy166II | GTNNAC | 6 cut(s) | 40, 290, 593, 774, 825, 924 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 708 |
| Hpy188III | TCNNGA | 3 cut(s) | 446, 612, 813 |
| Hpy8I | GTNNAC | 6 cut(s) | 40, 290, 593, 774, 825, 924 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4IV | ACGT | 1 cut(s) | 821 |
| HpyCH4V | TGCA | 5 cut(s) | 398, 619, 907, 918, 924 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 429, 495 |
| HpySE526I | ACGT | 1 cut(s) | 821 |
| Hsp92II | CATG | 2 cut(s) | 11, 398 |
| HspAI | GCGC | 1 cut(s) | 738 |
| Kzo9I | GATC | 1 cut(s) | 170 |
| LmnI | GCTCC | 3 cut(s) | 4, 225, 364 |
| LpnPI | CCDG | 8 cut(s) | 106, 310, 336, 338, 346, 387, 416, 730 |
| Lsp1109I | GCAGC | 2 cut(s) | 334, 410 |
| MaeI | CTAG | 5 cut(s) | 69, 201, 344, 672, 876 |
| MaeII | ACGT | 1 cut(s) | 821 |
| MaeIII | GTNAC | 3 cut(s) | 205, 732, 817 |
| MalI | GATC | 1 cut(s) | 172 |
| MbiI | CCGCTC | 1 cut(s) | 228 |
| MboI | GATC | 1 cut(s) | 170 |
| MboII | GAAGA | 3 cut(s) | 119, 855, 905 |
| MflI | RGATCY | 1 cut(s) | 170 |
| MhlI | GDGCHC | 2 cut(s) | 514, 926 |
| MluCI | AATT | 6 cut(s) | 74, 384, 607, 623, 728, 898 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MmeI | TCCRAC | 2 cut(s) | 361, 770 |
| MnlI | CCTC | 8 cut(s) | 442, 460, 476, 581, 592, 634, 675, 777 |
| MseI | TTAA | 5 cut(s) | 167, 329, 506, 626, 939 |
| MslI | CAYNNNNRTG | 1 cut(s) | 393 |
| MspI | CCGG | 2 cut(s) | 297, 325 |
| MvnI | CGCG | 2 cut(s) | 447, 738 |
| NdeII | GATC | 1 cut(s) | 170 |
| NheI | GCTAGC | 1 cut(s) | 343 |
| NlaIII | CATG | 2 cut(s) | 11, 398 |
| NlaIV | GGNNCC | 2 cut(s) | 406, 419 |
| NruI | TCGCGA | 1 cut(s) | 447 |
| NspI | RCATGY | 1 cut(s) | 11 |
| NspV | TTCGAA | 1 cut(s) | 726 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 818 |
| PkrI | GCNGC | 2 cut(s) | 349, 400 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| PpuMI | RGGWCCY | 1 cut(s) | 404 |
| PshBI | ATTAAT | 1 cut(s) | 626 |
| Psp5II | RGGWCCY | 1 cut(s) | 404 |
| PspN4I | GGNNCC | 2 cut(s) | 406, 419 |
| PspPI | GGNCC | 3 cut(s) | 123, 404, 418 |
| PspPPI | RGGWCCY | 1 cut(s) | 404 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 757, 789 |
| PsuI | RGATCY | 1 cut(s) | 170 |
| RruI | TCGCGA | 1 cut(s) | 447 |
| RsaI | GTAC | 4 cut(s) | 52, 67, 647, 775 |
| RsaNI | GTAC | 4 cut(s) | 51, 66, 646, 774 |
| RseI | CAYNNNNRTG | 1 cut(s) | 393 |
| SalI | GTCGAC | 1 cut(s) | 288 |
| SaqAI | TTAA | 5 cut(s) | 167, 329, 506, 626, 939 |
| SatI | GCNGC | 2 cut(s) | 348, 399 |
| Sau3AI | GATC | 1 cut(s) | 170 |
| Sau96I | GGNCC | 3 cut(s) | 123, 404, 418 |
| ScaI | AGTACT | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 287 |
| SduI | GDGCHC | 2 cut(s) | 514, 926 |
| SfuI | TTCGAA | 1 cut(s) | 726 |
| SinI | GGWCC | 1 cut(s) | 404 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 393 |
| SmlI | CTYRAG | 1 cut(s) | 596 |
| SmoI | CTYRAG | 1 cut(s) | 596 |
| SpeI | ACTAGT | 3 cut(s) | 68, 671, 875 |
| Sse9I | AATT | 6 cut(s) | 74, 384, 607, 623, 728, 898 |
| SsiI | CCGC | 1 cut(s) | 228 |
| SspI | AATATT | 1 cut(s) | 250 |
| SspMI | CTAG | 5 cut(s) | 69, 201, 344, 672, 876 |
| TaiI | ACGT | 1 cut(s) | 824 |
| TaqI | TCGA | 3 cut(s) | 289, 613, 726 |
| TasI | AATT | 6 cut(s) | 74, 384, 607, 623, 728, 898 |
| TatI | WGTACW | 2 cut(s) | 50, 65 |
| Tru1I | TTAA | 5 cut(s) | 167, 329, 506, 626, 939 |
| Tru9I | TTAA | 5 cut(s) | 167, 329, 506, 626, 939 |
| TscAI | CASTG | 6 cut(s) | 49, 184, 776, 786, 920, 931 |
| TseI | GCWGC | 2 cut(s) | 347, 398 |
| TspDTI | ATGAA | 5 cut(s) | 377, 414, 579, 618, 900 |
| TspRI | CASTG | 6 cut(s) | 49, 184, 776, 786, 920, 931 |
| VneI | GTGCAC | 1 cut(s) | 922 |
| VpaK11BI | GGWCC | 1 cut(s) | 404 |
| VspI | ATTAAT | 1 cut(s) | 626 |
| XapI | RAATTY | 3 cut(s) | 74, 384, 607 |
| XceI | RCATGY | 1 cut(s) | 11 |
| XmiI | GTMKAC | 2 cut(s) | 39, 289 |
| XspI | CTAG | 5 cut(s) | 69, 201, 344, 672, 876 |
| ZrmI | AGTACT | 1 cut(s) | 67 |