Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

49015984 .. 49018147

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCAATTCCATTTTGAGTTTGAAGTAAGATTTGAAATGTTGTTTGACAGGGAAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGGTTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCAGGGAGGAGGTTTGTTACTGGTGCCTTTTTGCAACTGATAACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTCCAGGCGGGTCGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTGTCTCGTGATGATTATGGGTTTGAAAAGGAGCTTGCCGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGGTTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTATGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGAGACAGGCACCAAACCCCACAGATGCTGCCAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATACTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

338

Amino Acids

37.62

Weight (kDa)

4.88

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	159, 706
AciI	CCGC	4 cut(s)	281, 338, 470, 1004
AcsI	RAATTY	3 cut(s)	204, 802, 997
AcuI	CTGAAG	5 cut(s)	395, 494, 582, 927, 969
AfaI	GTAC	2 cut(s)	390, 983
AfiI	CCNNNNNNNGG	4 cut(s)	280, 355, 412, 739
AgsI	TTSAA	7 cut(s)	23, 35, 236, 457, 557, 605, 855
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	242, 322, 409, 465, 608, 650
AluI	AGCT	6 cut(s)	242, 322, 409, 465, 608, 650
Alw21I	GWGCWC	3 cut(s)	135, 244, 304
Alw26I	GTCTC	3 cut(s)	440, 521, 694
Alw44I	GTGCAC	1 cut(s)	300
AlwNI	CAGNNNCTG	2 cut(s)	418, 725
Ama87I	CYCGRG	1 cut(s)	697
AoxI	GGCC	1 cut(s)	621
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	322, 725
ApoI	RAATTY	3 cut(s)	204, 802, 997
AspS9I	GGNCC	2 cut(s)	673, 848
AsuHPI	GGTGA	3 cut(s)	338, 394, 977
AvaI	CYCGRG	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	673, 848
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	936, 969
BanI	GGYRCC	2 cut(s)	159, 706
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	2 cut(s)	261, 437
Bbv12I	GWGCWC	3 cut(s)	135, 244, 304
BbvI	GCAGC	2 cut(s)	309, 712
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	3 cut(s)	440, 521, 694
BfaI	CTAG	3 cut(s)	861, 914, 957
BfmI	CTRYAG	2 cut(s)	575, 750
BisI	GCNGC	4 cut(s)	323, 339, 470, 726
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	324, 340, 471, 727
BmcAI	AGTACT	1 cut(s)	983
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	673, 848
BmeT110I	CYCGRG	1 cut(s)	697
BmgT120I	GGNCC	2 cut(s)	673, 848
BmiI	GGNNCC	2 cut(s)	161, 708
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	5 cut(s)	109, 583, 712, 878, 916
BpmI	CTGGAG	2 cut(s)	260, 338
Bpu1102I	GCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 355, 412, 739
Bse1I	ACTGG	4 cut(s)	99, 161, 191, 321
Bse3DI	GCAATG	2 cut(s)	129, 795
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	280, 355, 412, 739
BseMI	GCAATG	2 cut(s)	129, 795
BseMII	CTCAG	3 cut(s)	148, 207, 729
BseNI	ACTGG	4 cut(s)	99, 161, 191, 321
BseRI	GAGGAG	2 cut(s)	158, 263
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	309, 712
BseYI	CCCAGC	1 cut(s)	405
BshFI	GGCC	1 cut(s)	623
BshNI	GGYRCC	2 cut(s)	159, 706
BsiHKAI	GWGCWC	3 cut(s)	135, 244, 304
BsiHKCI	CYCGRG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	4 cut(s)	280, 355, 412, 739
BsmAI	GTCTC	3 cut(s)	440, 521, 694
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	623
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	697
Bsp1286I	GDGCHC	3 cut(s)	135, 244, 304
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	632
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	4 cut(s)	281, 338, 470, 1004
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	3 cut(s)	147, 206, 730
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	161, 708
BspMAI	CTGCAG	1 cut(s)	754
BspT107I	GGYRCC	2 cut(s)	159, 706
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	2 cut(s)	129, 795
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	99, 161, 191, 321
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	632
BssSI	CACGAG	2 cut(s)	261, 437
Bst2BI	CACGAG	2 cut(s)	261, 437
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	350, 496, 579
Bst6I	CTCTTC	1 cut(s)	262
BstAPI	GCANNNNNTGC	3 cut(s)	593, 749, 758
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	300, 467
BstDEI	CTNAG	4 cut(s)	134, 193, 646, 738
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	1 cut(s)	635
BstMAI	GTCTC	3 cut(s)	440, 521, 694
BstMBI	GATC	1 cut(s)	632
BstMWI	GCNNNNNNNGC	6 cut(s)	415, 475, 593, 647, 749, 758
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	2 cut(s)	575, 750
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	309, 712
BsuRI	GGCC	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	5 cut(s)	201, 501, 584, 689, 933
Cac8I	GCNNGC	2 cut(s)	300, 467
CaiI	CAGNNNCTG	2 cut(s)	418, 725
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	673, 848
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	2 cut(s)	389, 982
CviAII	CATG	3 cut(s)	58, 245, 619
CviQI	GTAC	2 cut(s)	389, 982
DdeI	CTNAG	4 cut(s)	134, 193, 646, 738
DpnI	GATC	1 cut(s)	634
DpnII	GATC	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	673, 848
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	5 cut(s)	395, 494, 582, 927, 969
Eco88I	CYCGRG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	2 cut(s)	204, 997
EcoRII	CCWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	620, 871
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	3 cut(s)	61, 248, 622
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	3 cut(s)	57, 244, 618
FauI	CCCGC	2 cut(s)	274, 997
Fnu4HI	GCNGC	4 cut(s)	323, 339, 470, 726
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	323, 339, 470, 726
FspBI	CTAG	3 cut(s)	861, 914, 957
GluI	GCNGC	4 cut(s)	323, 339, 470, 726
GsaI	CCCAGC	1 cut(s)	409
GsuI	CTGGAG	2 cut(s)	260, 338
HaeIII	GGCC	1 cut(s)	623
HgaI	GACGC	1 cut(s)	801
Hin1II	CATG	3 cut(s)	61, 248, 622
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	5 cut(s)	254, 270, 425, 557, 881
HphI	GGTGA	3 cut(s)	338, 394, 977
Hpy166II	GTNNAC	5 cut(s)	302, 381, 402, 572, 689
Hpy188I	TCNGA	4 cut(s)	739, 781, 874, 886
Hpy188III	TCNNGA	8 cut(s)	58, 233, 293, 439, 524, 554, 697, 699
Hpy8I	GTNNAC	5 cut(s)	302, 381, 402, 572, 689
HpyAV	CCTTC	5 cut(s)	221, 323, 367, 496, 861
HpyCH4III	ACNGT	3 cut(s)	350, 496, 579
HpyCH4IV	ACGT	1 cut(s)	857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	415, 475, 593, 647, 749, 758
HpyF3I	CTNAG	4 cut(s)	134, 193, 646, 738
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	3 cut(s)	61, 248, 622
Kzo9I	GATC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	319, 462
Lsp1109I	GCAGC	2 cut(s)	309, 712
LweI	GCATC	5 cut(s)	109, 583, 712, 878, 916
MaeI	CTAG	3 cut(s)	861, 914, 957
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	3 cut(s)	72, 152, 952
MalI	GATC	1 cut(s)	634
MboI	GATC	1 cut(s)	632
MboII	GAAGA	3 cut(s)	249, 528, 920
MfeI	CAATTG	1 cut(s)	789
MhlI	GDGCHC	3 cut(s)	135, 244, 304
MluCI	AATT	8 cut(s)	5, 109, 204, 532, 744, 789, 802, 997
MlyI	GAGTC	2 cut(s)	248, 264
MmeI	TCCRAC	1 cut(s)	823
MnlI	CCTC	8 cut(s)	136, 139, 284, 478, 555, 656, 733, 839
Mph1103I	ATGCAT	2 cut(s)	620, 871
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	472, 1004
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	415, 475, 593, 647, 749, 758
NdeII	GATC	1 cut(s)	632
NlaIII	CATG	3 cut(s)	61, 248, 622
NlaIV	GGNNCC	2 cut(s)	161, 708
NsiI	ATGCAT	2 cut(s)	620, 871
PaeR7I	CTCGAG	1 cut(s)	697
PagI	TCATGA	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	425, 557, 881
PkrI	GCNGC	4 cut(s)	324, 340, 471, 727
PleI	GAGTC	2 cut(s)	248, 264
PpsI	GAGTC	2 cut(s)	248, 264
PpuMI	RGGWCCY	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	161, 708
PspPI	GGNCC	2 cut(s)	673, 848
PspPPI	RGGWCCY	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	2 cut(s)	418, 725
RsaI	GTAC	2 cut(s)	390, 983
RsaNI	GTAC	2 cut(s)	389, 982
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	323, 339, 470, 726
Sau3AI	GATC	1 cut(s)	632
Sau96I	GGNCC	2 cut(s)	673, 848
ScaI	AGTACT	1 cut(s)	983
SchI	GAGTC	2 cut(s)	248, 264
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	3 cut(s)	135, 244, 304
SfaNI	GCATC	5 cut(s)	109, 583, 712, 878, 916
SfcI	CTRYAG	2 cut(s)	575, 750
Sfr274I	CTCGAG	1 cut(s)	697
SinI	GGWCC	2 cut(s)	673, 848
SlaI	CTCGAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	212, 697
SmoI	CTYRAG	2 cut(s)	212, 697
Sse9I	AATT	8 cut(s)	5, 109, 204, 532, 744, 789, 802, 997
SsiI	CCGC	4 cut(s)	281, 338, 470, 1004
SspMI	CTAG	3 cut(s)	861, 914, 957
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	350, 496, 579
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	2 cut(s)	560, 698
TasI	AATT	8 cut(s)	5, 109, 204, 532, 744, 789, 802, 997
TatI	WGTACW	2 cut(s)	388, 981
TauI	GCSGC	2 cut(s)	341, 472
TfiI	GAWTC	3 cut(s)	425, 557, 881
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	5 cut(s)	201, 501, 584, 696, 940
TseI	GCWGC	2 cut(s)	322, 725
TspDTI	ATGAA	2 cut(s)	386, 438
TspRI	CASTG	5 cut(s)	201, 501, 584, 696, 940
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	673, 848
XapI	RAATTY	3 cut(s)	204, 802, 997
XhoI	CTCGAG	1 cut(s)	697
XspI	CTAG	3 cut(s)	861, 914, 957
ZrmI	AGTACT	1 cut(s)	983
Zsp2I	ATGCAT	2 cut(s)	620, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.