Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

74549610 .. 74552627

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG536800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTGAAGGAGTTGGGGTTGGGATTGGAGATGAGGTTGGATTACAAGAAAGGTGGTGAGGTTGTGAAGGCATATGAGATAGGGAAGGCAGTGGTTAGTGTAATGGAGGACAGCGAGGTGAGGAAGAAGGTTAAAGAGATGGGGGTGGTGAGCAGAAAAGCTGTAGAGGACGGTGGGTCTTCCTCCGTTTCTCTTGGACGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTTGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGATGCAATGGAAGTGCTCAGCATGGAAGAGGAGGCTTTCTCTCTGCGATCCATCGGTTATTAAGGTCTACTTACTTTGTTGATTCTCATTATAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCTGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTGTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGAGGATGAGCAATCAAGATGTTTGAAAAGGAGCTTGCCGTTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGGTTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTCGAAGCTTTTGTATGCATGGCCTTTGACAGATCATTAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

272

Amino Acids

30.29

Weight (kDa)

8.48

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	205, 401
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	325, 376
AcuI	CTGAAG	3 cut(s)	518, 560, 753
AfaI	GTAC	4 cut(s)	282, 309, 513, 814
AfiI	CCNNNNNNNGG	2 cut(s)	478, 535
AgsI	TTSAA	7 cut(s)	235, 266, 274, 287, 628, 646, 728
AhdI	GACNNNNNGTC	1 cut(s)	175
AluBI	AGCT	5 cut(s)	161, 445, 532, 636, 779
AluI	AGCT	5 cut(s)	161, 445, 532, 636, 779
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	3 cut(s)	232, 317, 692
AlwI	GGATC	2 cut(s)	325, 376
AlwNI	CAGNNNCTG	1 cut(s)	541
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	215, 445
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	6 cut(s)	16, 68, 130, 160, 461, 517
BaeGI	GKGCMC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	202, 432
BccI	CCATC	3 cut(s)	133, 242, 393
BceAI	ACGGC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	232, 317, 692
BfmI	CTRYAG	2 cut(s)	162, 746
BisI	GCNGC	3 cut(s)	216, 446, 462
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	217, 447, 463
BmcAI	AGTACT	1 cut(s)	282
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmsI	GCATC	2 cut(s)	326, 754
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	3 cut(s)	20, 32, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 535
Bse1I	ACTGG	1 cut(s)	444
Bse3DI	GCAATG	2 cut(s)	254, 346
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	2 cut(s)	550, 613
BseLI	CCNNNNNNNGG	2 cut(s)	478, 535
BseMI	GCAATG	2 cut(s)	254, 346
BseMII	CTCAG	3 cut(s)	223, 365, 594
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	202, 432
BseYI	CCCAGC	1 cut(s)	528
BshFI	GGCC	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	478, 535
BsmAI	GTCTC	3 cut(s)	232, 317, 692
BsnI	GGCC	1 cut(s)	794
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	352, 602
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	317, 328, 381, 803
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	3 cut(s)	222, 364, 595
BspPI	GGATC	2 cut(s)	325, 376
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	254, 346
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	4 cut(s)	317, 328, 381, 803
Bst4CI	ACNGT	4 cut(s)	173, 473, 667, 750
Bst6I	CTCTTC	2 cut(s)	230, 355
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	209, 351, 603
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	550, 613
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	4 cut(s)	320, 331, 384, 806
BstMAI	GTCTC	3 cut(s)	232, 317, 692
BstMBI	GATC	4 cut(s)	317, 328, 381, 803
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 538, 646, 764
BstNSI	RCATGY	1 cut(s)	245
BstSFI	CTRYAG	2 cut(s)	162, 746
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	2 cut(s)	202, 432
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	794
BtgI	CCRYGG	1 cut(s)	472
BtgZI	GCGATG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	550, 613
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	4 cut(s)	96, 600, 672, 755
Cac8I	GCNNGC	1 cut(s)	638
CaiI	CAGNNNCTG	1 cut(s)	541
CfoI	GCGC	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	281, 308, 512, 813
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	242, 356, 790
CviJI	RGCY	9 cut(s)	161, 215, 369, 445, 532, 574, 636, 779, 794
CviKI_1	RGCY	9 cut(s)	161, 215, 369, 445, 532, 574, 636, 779, 794
CviQI	GTAC	4 cut(s)	281, 308, 512, 813
DdeI	CTNAG	3 cut(s)	209, 351, 603
DpnI	GATC	4 cut(s)	319, 330, 383, 805
DpnII	GATC	4 cut(s)	317, 328, 381, 803
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	230, 355
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	2 cut(s)	230, 355
Eco31I	GGTCTC	1 cut(s)	692
Eco57I	CTGAAG	3 cut(s)	518, 560, 753
EcoT22I	ATGCAT	1 cut(s)	791
FaeI	CATG	3 cut(s)	245, 359, 793
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	3 cut(s)	241, 355, 789
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	205, 401
Fnu4HI	GCNGC	3 cut(s)	216, 446, 462
FokI	GGATG	2 cut(s)	557, 620
Fsp4HI	GCNGC	3 cut(s)	216, 446, 462
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	216, 446, 462
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	245, 359, 793
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	4 cut(s)	207, 416, 548, 728
HphI	GGTGA	6 cut(s)	16, 68, 130, 160, 461, 517
Hpy166II	GTNNAC	5 cut(s)	206, 402, 504, 525, 743
Hpy188I	TCNGA	3 cut(s)	294, 322, 579
Hpy188III	TCNNGA	3 cut(s)	618, 695, 725
Hpy8I	GTNNAC	5 cut(s)	206, 402, 504, 525, 743
HpyAV	CCTTC	6 cut(s)	61, 79, 121, 446, 490, 667
HpyCH4III	ACNGT	4 cut(s)	173, 473, 667, 750
HpyCH4V	TGCA	2 cut(s)	339, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 538, 646, 764
HpyF3I	CTNAG	3 cut(s)	209, 351, 603
Hsp92II	CATG	3 cut(s)	245, 359, 793
HspAI	GCGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	317, 328, 381, 803
LmnI	GCTCC	3 cut(s)	223, 442, 633
LpnPI	CCDG	8 cut(s)	196, 425, 434, 464, 521, 527, 542, 708
Lsp1109I	GCAGC	2 cut(s)	202, 432
LweI	GCATC	2 cut(s)	326, 754
MalI	GATC	4 cut(s)	319, 330, 383, 805
MboI	GATC	4 cut(s)	317, 328, 381, 803
MboII	GAAGA	7 cut(s)	136, 171, 247, 278, 313, 372, 699
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	352, 602
MluCI	AATT	2 cut(s)	261, 703
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	18, 245
Mph1103I	ATGCAT	1 cut(s)	791
MseI	TTAA	2 cut(s)	132, 395
MslI	CAYNNNNRTG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	224, 538, 646, 764
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	4 cut(s)	317, 328, 381, 803
NlaIII	CATG	3 cut(s)	245, 359, 793
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	416, 548, 728
PkrI	GCNGC	3 cut(s)	217, 447, 463
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	541
RsaI	GTAC	4 cut(s)	282, 309, 513, 814
RsaNI	GTAC	4 cut(s)	281, 308, 512, 813
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	132, 395
SatI	GCNGC	3 cut(s)	216, 446, 462
Sau3AI	GATC	4 cut(s)	317, 328, 381, 803
ScaI	AGTACT	1 cut(s)	282
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	352, 602
SfaNI	GCATC	2 cut(s)	326, 754
SfcI	CTRYAG	2 cut(s)	162, 746
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	261, 703
SsiI	CCGC	1 cut(s)	461
TaaI	ACNGT	4 cut(s)	173, 473, 667, 750
TaqI	TCGA	2 cut(s)	731, 774
TasI	AATT	2 cut(s)	261, 703
TatI	WGTACW	3 cut(s)	280, 307, 511
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	3 cut(s)	416, 548, 728
Tru1I	TTAA	2 cut(s)	132, 395
Tru9I	TTAA	2 cut(s)	132, 395
TscAI	CASTG	4 cut(s)	96, 607, 672, 755
TseI	GCWGC	2 cut(s)	215, 445
TspDTI	ATGAA	3 cut(s)	243, 509, 561
TspGWI	ACGGA	2 cut(s)	175, 214
TspRI	CASTG	4 cut(s)	96, 607, 672, 755
XceI	RCATGY	1 cut(s)	245
XmiI	GTMKAC	2 cut(s)	205, 401
ZrmI	AGTACT	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.