Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

77814734 .. 77815930

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGGTATTGACTTCTGTACAAGAGTTGTTCACCCAGCTTCAGGTGCTGGATGAATCTCTTTCTCTTGTGATGATTATGGGCTTCAGAGAACGAGATACAAAAATGGCACTGAGGATGAGCAATCAAGATGTTTCCATCAGCCCTGTATACACTTATGATGAAATGACAGTGGAGAAGGCATTGGATTTGACAAATCCAGAGACCAATTCTTCCATACAGCAACATCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAAGAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTATTGCATCAGAGCGTGAACTTGCTGAAGAACTAGCACAAGGAGAGGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

224

Amino Acids

24.17

Weight (kDa)

4.31

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	478, 655
AcuI	CTGAAG	4 cut(s)	26, 70, 258, 585
AfaI	GTAC	3 cut(s)	21, 291, 641
AfiI	CCNNNNNNNGG	2 cut(s)	43, 415
AgsI	TTSAA	4 cut(s)	233, 281, 531, 608
AluBI	AGCT	3 cut(s)	40, 284, 326
AluI	AGCT	3 cut(s)	40, 284, 326
Alw26I	GTCTC	1 cut(s)	197
AlwNI	CAGNNNCTG	2 cut(s)	49, 401
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	478, 655
AspS9I	GGNCC	2 cut(s)	349, 524
AsuHPI	GGTGA	2 cut(s)	25, 635
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	349, 524
BanI	GGYRCC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	537, 572, 615
BfmI	CTRYAG	2 cut(s)	251, 426
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	641
Bme18I	GGWCC	2 cut(s)	349, 524
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	349, 524
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	3 cut(s)	259, 388, 554
BsaI	GGTCTC	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 415
Bse3DI	GCAATG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	58, 123
BseLI	CCNNNNNNNGG	2 cut(s)	43, 415
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	104, 405
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	355, 390
BslI	CCNNNNNNNGG	2 cut(s)	43, 415
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	355, 390
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	105, 406
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	19
BssMI	GATC	1 cut(s)	308
BssNAI	GTATAC	1 cut(s)	151
Bst1107I	GTATAC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	172, 255
BstAPI	GCANNNNNTGC	3 cut(s)	269, 425, 434
BstAUI	TGTACA	1 cut(s)	19
BstDEI	CTNAG	4 cut(s)	113, 322, 414, 438
BstF5I	GGATG	2 cut(s)	58, 123
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 269, 323, 425, 434
BstSFI	CTRYAG	2 cut(s)	251, 426
BstV1I	GCAGC	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	58, 123
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	5 cut(s)	110, 177, 260, 365, 591
CaiI	CAGNNNCTG	2 cut(s)	49, 401
Cfr13I	GGNCC	2 cut(s)	349, 524
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	20, 290, 640
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	8 cut(s)	40, 84, 144, 284, 299, 326, 587, 647
CviKI_1	RGCY	8 cut(s)	40, 84, 144, 284, 299, 326, 587, 647
CviQI	GTAC	3 cut(s)	20, 290, 640
DdeI	CTNAG	4 cut(s)	113, 322, 414, 438
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	349, 524
Eco57I	CTGAAG	4 cut(s)	26, 70, 258, 585
Eco88I	CYCGRG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	655
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	80, 151, 159, 218, 296, 600, 632
FaqI	GGGAC	2 cut(s)	355, 390
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	2 cut(s)	65, 130
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	3 cut(s)	537, 572, 615
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	299
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	2 cut(s)	56, 233
HphI	GGTGA	2 cut(s)	25, 635
Hpy166II	GTNNAC	5 cut(s)	33, 151, 248, 365, 557
Hpy188I	TCNGA	4 cut(s)	89, 415, 457, 550
Hpy188III	TCNNGA	4 cut(s)	128, 200, 230, 375
Hpy8I	GTNNAC	5 cut(s)	33, 151, 248, 365, 557
HpyAV	CCTTC	2 cut(s)	172, 537
HpyCH4III	ACNGT	2 cut(s)	172, 255
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	5 cut(s)	331, 428, 464, 476, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 269, 323, 425, 434
HpyF3I	CTNAG	4 cut(s)	113, 322, 414, 438
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	308
LpnPI	CCDG	8 cut(s)	29, 35, 50, 159, 213, 317, 365, 438
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	3 cut(s)	259, 388, 554
MaeI	CTAG	3 cut(s)	537, 572, 615
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	2 cut(s)	204, 578
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	5 cut(s)	208, 420, 465, 478, 655
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	6 cut(s)	108, 231, 332, 409, 515, 577
MspA1I	CMGCKG	1 cut(s)	662
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	5 cut(s)	46, 269, 323, 425, 434
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	56, 233
PkrI	GCNGC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	349, 524
PspPPI	RGGWCCY	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	2 cut(s)	49, 401
RsaI	GTAC	3 cut(s)	21, 291, 641
RsaNI	GTAC	3 cut(s)	20, 290, 640
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	308
Sau96I	GGNCC	2 cut(s)	349, 524
ScaI	AGTACT	1 cut(s)	641
SetI	ASST	8 cut(s)	9, 42, 48, 286, 328, 526, 536, 625
SfaNI	GCATC	3 cut(s)	259, 388, 554
SfcI	CTRYAG	2 cut(s)	251, 426
SinI	GGWCC	2 cut(s)	349, 524
Sse9I	AATT	5 cut(s)	208, 420, 465, 478, 655
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	3 cut(s)	537, 572, 615
TaaI	ACNGT	2 cut(s)	172, 255
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	236
TasI	AATT	5 cut(s)	208, 420, 465, 478, 655
TatI	WGTACW	2 cut(s)	19, 639
TfiI	GAWTC	2 cut(s)	56, 233
TscAI	CASTG	5 cut(s)	117, 177, 260, 372, 598
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	17, 69, 177
TspRI	CASTG	5 cut(s)	117, 177, 260, 372, 598
VpaK11BI	GGWCC	2 cut(s)	349, 524
XapI	RAATTY	2 cut(s)	478, 655
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	3 cut(s)	537, 572, 615
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.