Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

9919697 .. 9921208

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGAGGCTTTCTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATAAACTGGCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAGGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGACGGTGTTGACTTCTGAACAAGAGAAGTTCACCCAGGTGCTGGATGAATCTCTCTCTCTTGTGATGATCATGGGCTTCAGAGAACGAGATACAAAAAGGGCACTGGGGATGAGCAATCAAGATTTTCTTGACTTTGCAGGTTTGAAAAGGAGCTTGCTACTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTGGATTTGACAAATCCAGAGACCAATTGTTCCATACAGCAACAACCTGAATCAAGGAAAAGTAAACTACAGTGCCAGCCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

239

Amino Acids

27.26

Weight (kDa)

5.24

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	284, 512
AccB7I	CCANNNNNTGG	1 cut(s)	424
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	4 cut(s)	272, 445, 566, 654
AfaI	GTAC	2 cut(s)	687, 715
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	248, 529, 677
AjnI	CCWGG	1 cut(s)	417
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	130, 254, 334, 537, 680
AluI	AGCT	5 cut(s)	130, 254, 334, 537, 680
Alw21I	GWGCWC	3 cut(s)	81, 256, 316
Alw26I	GTCTC	2 cut(s)	183, 593
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	693
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	406
BaeGI	GKGCMC	2 cut(s)	316, 487
BanII	GRGCYC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
BauI	CACGAG	1 cut(s)	273
Bbv12I	GWGCWC	3 cut(s)	81, 256, 316
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	183, 593
BfmI	CTRYAG	1 cut(s)	647
BfuAI	ACCTGC	2 cut(s)	284, 512
BisI	GCNGC	2 cut(s)	335, 351
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	336, 352
Bme1390I	CCNGG	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	55, 655
BmuI	ACTGGG	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	4 cut(s)	203, 333, 492, 659
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	433, 498
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	94, 219
BseNI	ACTGG	4 cut(s)	203, 333, 492, 659
BseRI	GAGGAG	2 cut(s)	104, 107
BseSI	GKGCMC	2 cut(s)	316, 487
BseXI	GCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	81, 256, 316
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	183, 593
BsnI	GGCC	1 cut(s)	695
Bso31I	GGTCTC	1 cut(s)	593
Bsp1286I	GDGCHC	4 cut(s)	81, 256, 316, 487
Bsp143I	GATC	3 cut(s)	112, 450, 704
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	2 cut(s)	93, 218
BspDI	ATCGAT	1 cut(s)	159
BspMI	ACCTGC	2 cut(s)	284, 512
BspPI	GGATC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	4 cut(s)	203, 333, 492, 659
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	112, 450, 704
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	362, 388, 568, 651
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	312, 539, 656
BstDEI	CTNAG	3 cut(s)	80, 185, 205
BstF5I	GGATG	2 cut(s)	433, 498
BstKTI	GATC	3 cut(s)	115, 453, 707
BstMAI	GTCTC	2 cut(s)	183, 593
BstMBI	GATC	3 cut(s)	112, 450, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	647
BstSLI	GKGCMC	2 cut(s)	316, 487
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	695
BsuTUI	ATCGAT	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	433, 498
BtsIMutI	CAGTG	5 cut(s)	213, 367, 485, 573, 656
BveI	ACCTGC	2 cut(s)	284, 512
Cac8I	GCNNGC	3 cut(s)	312, 539, 656
CaiI	CAGNNNCTG	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	686, 714
CviAII	CATG	5 cut(s)	85, 181, 257, 454, 691
CviQI	GTAC	2 cut(s)	686, 714
DdeI	CTNAG	3 cut(s)	80, 185, 205
DpnI	GATC	3 cut(s)	114, 452, 706
DpnII	GATC	3 cut(s)	112, 450, 704
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	4 cut(s)	272, 445, 566, 654
EcoICRI	GAGCTC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	5 cut(s)	88, 184, 260, 457, 694
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	5 cut(s)	84, 180, 256, 453, 690
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	335, 351
FokI	GGATG	2 cut(s)	440, 505
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	335, 351
GluI	GCNGC	2 cut(s)	335, 351
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	695
Hin1II	CATG	5 cut(s)	88, 184, 260, 457, 694
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	4 cut(s)	266, 282, 431, 629
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	4 cut(s)	314, 393, 414, 644
Hpy188I	TCNGA	2 cut(s)	400, 464
Hpy188III	TCNNGA	5 cut(s)	245, 305, 503, 512, 596
Hpy8I	GTNNAC	4 cut(s)	314, 393, 414, 644
HpyAV	CCTTC	4 cut(s)	153, 296, 335, 568
HpyCH4III	ACNGT	4 cut(s)	362, 388, 568, 651
HpyCH4V	TGCA	5 cut(s)	29, 68, 154, 314, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	3 cut(s)	80, 185, 205
Hsp92II	CATG	5 cut(s)	88, 184, 260, 457, 694
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	112, 450, 704
LmnI	GCTCC	2 cut(s)	331, 534
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	2 cut(s)	55, 655
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	3 cut(s)	114, 452, 706
MboI	GATC	3 cut(s)	112, 450, 704
MboII	GAAGA	1 cut(s)	261
MfeI	CAATTG	1 cut(s)	604
MhlI	GDGCHC	4 cut(s)	81, 256, 316, 487
MluCI	AATT	3 cut(s)	52, 216, 604
MlyI	GAGTC	2 cut(s)	260, 276
MnlI	CCTC	5 cut(s)	82, 85, 88, 232, 550
MseI	TTAA	2 cut(s)	42, 126
MslI	CAYNNNNRTG	2 cut(s)	24, 419
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	547
NdeII	GATC	3 cut(s)	112, 450, 704
NlaIII	CATG	5 cut(s)	88, 184, 260, 457, 694
OliI	CACNNNNGTG	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	431, 629
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	336, 352
PleI	GAGTC	2 cut(s)	260, 276
PpsI	GAGTC	2 cut(s)	260, 276
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	687, 715
RsaNI	GTAC	2 cut(s)	686, 714
RseI	CAYNNNNRTG	2 cut(s)	24, 419
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	42, 126
SatI	GCNGC	2 cut(s)	335, 351
Sau3AI	GATC	3 cut(s)	112, 450, 704
SchI	GAGTC	2 cut(s)	260, 276
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	4 cut(s)	81, 256, 316, 487
SfaNI	GCATC	2 cut(s)	55, 655
SfcI	CTRYAG	1 cut(s)	647
SmiMI	CAYNNNNRTG	2 cut(s)	24, 419
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	52, 216, 604
SsiI	CCGC	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	362, 388, 568, 651
TaqI	TCGA	2 cut(s)	135, 159
TasI	AATT	3 cut(s)	52, 216, 604
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	431, 629
Tru1I	TTAA	2 cut(s)	42, 126
Tru9I	TTAA	2 cut(s)	42, 126
TscAI	CASTG	5 cut(s)	213, 367, 492, 573, 656
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	169, 444
TspRI	CASTG	5 cut(s)	213, 367, 492, 573, 656
Van91I	CCANNNNNTGG	1 cut(s)	424
VneI	GTGCAC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.