Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

49044449 .. 49045632

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAAAGGACTCTTCTTGTGTTAGACTCCTTCAGGCAGGTTGTTATCCAGAGCGTGCACTGTGACTACTTCTACTACATATCTGAATGTTTGTCTACACTACGCAGGTCTACTTACTTTGTTGATTCTCATTATAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTGGACTTCTGTACAAGAGTTGTTCACCCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

81

Amino Acids

9.68

Weight (kDa)

6.25

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	28, 96
AccI	GTMKAC	2 cut(s)	95, 110
AciI	CCGC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	170, 226
BaeGI	GKGCMC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	239
BfuAI	ACCTGC	2 cut(s)	28, 96
BisI	GCNGC	2 cut(s)	155, 171
BlsI	GCNGC	2 cut(s)	156, 172
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	181, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	181, 237
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	220
BspACI	CCGC	1 cut(s)	170
BspMI	ACCTGC	2 cut(s)	28, 96
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	181, 237
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	62, 182
Bst6I	CTCTTC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	28, 96
Cac8I	GCNNGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	221
CviJI	RGCY	1 cut(s)	154
CviKI_1	RGCY	1 cut(s)	154
CviQI	GTAC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	237
FaiI	YATR	2 cut(s)	80, 135
FblI	GTMKAC	2 cut(s)	95, 110
Fnu4HI	GCNGC	2 cut(s)	155, 171
Fsp4HI	GCNGC	2 cut(s)	155, 171
GluI	GCNGC	2 cut(s)	155, 171
GsuI	CTGGAG	1 cut(s)	170
HinfI	GANTC	3 cut(s)	10, 26, 125
HphI	GGTGA	2 cut(s)	170, 226
Hpy166II	GTNNAC	5 cut(s)	58, 96, 111, 213, 234
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	5 cut(s)	58, 96, 111, 213, 234
HpyAV	CCTTC	3 cut(s)	40, 155, 199
HpyCH4III	ACNGT	2 cut(s)	62, 182
HpyCH4V	TGCA	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	19, 23, 62, 91, 134, 143, 173, 224
Lsp1109I	GCAGC	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	62
MboII	GAAGA	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	4, 20
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	156, 172
PleI	GAGTC	2 cut(s)	4, 20
PpsI	GAGTC	2 cut(s)	4, 20
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SatI	GCNGC	2 cut(s)	155, 171
SchI	GAGTC	2 cut(s)	4, 20
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	42, 110, 156, 192, 210, 243
SsiI	CCGC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	62, 182
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	125
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	95, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.