Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

77813677 .. 77814732

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTTTGTTTTAGTATCTGTCTGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGATTGATCAGCGGGCAATCATGATGAGCCTGATGTTAAATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTTGCGTTAGACTCCTTCAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

6.11

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	145, 438
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	93, 120
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	77, 85, 98, 362
AluBI	AGCT	3 cut(s)	244, 368, 422
AluI	AGCT	3 cut(s)	244, 368, 422
Alw21I	GWGCWC	2 cut(s)	231, 370
Alw26I	GTCTC	2 cut(s)	43, 297
AlwI	GGATC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	26, 422
ApoI	RAATTY	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	231, 370
BbvI	GCAGC	2 cut(s)	13, 409
BccI	CCATC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	43, 297
BisI	GCNGC	3 cut(s)	27, 423, 439
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	28, 424, 440
BmcAI	AGTACT	1 cut(s)	93
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	317, 421
Bse3DI	GCAATG	2 cut(s)	65, 225
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	65, 225
BseMII	CTCAG	2 cut(s)	244, 333
BseNI	ACTGG	2 cut(s)	317, 421
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	13, 409
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	231, 370
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	43, 297
Bsp1286I	GDGCHC	2 cut(s)	231, 370
Bsp143I	GATC	2 cut(s)	128, 139
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	2 cut(s)	145, 438
BspCNI	CTCAG	2 cut(s)	243, 332
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	153
BspPI	GGATC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	65, 225
BsrI	ACTGG	2 cut(s)	317, 421
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	128, 139
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	2 cut(s)	41, 388
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	230, 299, 319
BstDSI	CCRYGG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	131, 142
BstMAI	GTCTC	2 cut(s)	43, 297
BstMBI	GATC	2 cut(s)	128, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	13, 409
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	92, 119
CviAII	CATG	5 cut(s)	53, 154, 235, 295, 371
CviJI	RGCY	7 cut(s)	26, 162, 244, 316, 347, 368, 422
CviKI_1	RGCY	7 cut(s)	26, 162, 244, 316, 347, 368, 422
CviQI	GTAC	2 cut(s)	92, 119
DdeI	CTNAG	3 cut(s)	230, 299, 319
DpnI	GATC	2 cut(s)	130, 141
DpnII	GATC	2 cut(s)	128, 139
Eam1104I	CTCTTC	2 cut(s)	41, 388
EarI	CTCTTC	2 cut(s)	41, 388
Ecl136II	GAGCTC	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	5 cut(s)	56, 157, 238, 298, 374
FaiI	YATR	8 cut(s)	54, 89, 155, 236, 263, 278, 296, 372
FatI	CATG	5 cut(s)	52, 153, 234, 294, 370
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	27, 423, 439
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	3 cut(s)	27, 423, 439
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	27, 423, 439
GsuI	CTGGAG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	56, 157, 238, 298, 374
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	380, 396
HphI	GGTGA	1 cut(s)	438
Hpy188I	TCNGA	3 cut(s)	105, 133, 405
Hpy188III	TCNNGA	2 cut(s)	154, 359
HpyAV	CCTTC	4 cut(s)	267, 347, 410, 423
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	182, 218, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	230, 299, 319
Hsp92II	CATG	5 cut(s)	56, 157, 238, 298, 374
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	128, 139
LmnI	GCTCC	3 cut(s)	34, 241, 419
LpnPI	CCDG	8 cut(s)	8, 176, 230, 298, 361, 402, 411, 441
Lsp1109I	GCAGC	2 cut(s)	13, 409
LweI	GCATC	1 cut(s)	205
MalI	GATC	2 cut(s)	130, 141
MboI	GATC	2 cut(s)	128, 139
MboII	GAAGA	4 cut(s)	58, 89, 124, 375
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	231, 370
MluCI	AATT	3 cut(s)	72, 205, 330
MlyI	GAGTC	2 cut(s)	374, 390
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	2 cut(s)	170, 195
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	128, 139
NlaIII	CATG	5 cut(s)	56, 157, 238, 298, 374
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	28, 424, 440
PleI	GAGTC	2 cut(s)	374, 390
PpsI	GAGTC	2 cut(s)	374, 390
Psp124BI	GAGCTC	1 cut(s)	370
RsaI	GTAC	2 cut(s)	93, 120
RsaNI	GTAC	2 cut(s)	92, 119
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	170, 195
SatI	GCNGC	3 cut(s)	27, 423, 439
Sau3AI	GATC	2 cut(s)	128, 139
ScaI	AGTACT	1 cut(s)	93
SchI	GAGTC	2 cut(s)	374, 390
SduI	GDGCHC	2 cut(s)	231, 370
SetI	ASST	5 cut(s)	246, 358, 370, 424, 460
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	72, 205, 330
SsiI	CCGC	2 cut(s)	145, 438
SstI	GAGCTC	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	450
TaqI	TCGA	3 cut(s)	44, 249, 273
TasI	AATT	3 cut(s)	72, 205, 330
TatI	WGTACW	2 cut(s)	91, 118
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	170, 195
Tru9I	TTAA	2 cut(s)	170, 195
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	2 cut(s)	26, 422
TspDTI	ATGAA	2 cut(s)	54, 283
TspRI	CASTG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.