Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015027.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

12791 .. 14209

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015027.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgcttagagacataaactggctctcagtggcaggaattcgccttgagaaagccagagagggtcttgaacgagctcatggaaaggactcttctcgtgttagactccttcaggcaggttgttatccagagcgtgcactatatttgatactggagctgctggaaggggtggcggcgtatcacagtggtcaggttgataagtcaatgacggtgttgacttctgtacaagagaacagtcttagctttgcagggtggagggacaatggaccaagcaatctgtctactgctctcgggacatcaccaaaccccacagatgctgctgaccaatctgaggcaattcctgcagtcaatgctaacaacaatagtcaatctgatgttgcaattgacattgcaaattctcttgcgtcagtgcttgataatcaaaatggtcaagttggaggttcttcaacgtctagtaatgcatcagagcgtgattcagaaatggaaagccaacttgctgaagaactagcacaaggagatgctttctctgactatgatcgatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

180

Amino Acids

19.27

Weight (kDa)

4.4

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	36, 391
AcuI	CTGAAG	2 cut(s)	92, 516
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	68, 444
AluBI	AGCT	3 cut(s)	74, 154, 240
AluI	AGCT	3 cut(s)	74, 154, 240
Alw21I	GWGCWC	2 cut(s)	76, 136
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	154, 314
ApoI	RAATTY	2 cut(s)	36, 391
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	76, 136
BbvI	GCAGC	2 cut(s)	141, 301
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	2 cut(s)	450, 503
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	3 cut(s)	155, 171, 315
BlsI	GCNGC	3 cut(s)	156, 172, 316
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	263
BmsI	GCATC	3 cut(s)	301, 467, 505
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	23, 153
Bse3DI	GCAATG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	39, 318
BseNI	ACTGG	2 cut(s)	23, 153
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	141, 301
BshVI	ATCGAT	1 cut(s)	535
BsiHKAI	GWGCWC	2 cut(s)	76, 136
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	269, 304
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	269, 304
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	76, 136
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	38, 319
BspDI	ATCGAT	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	23, 153
BssMI	GATC	1 cut(s)	532
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	182, 208, 233
Bst6I	CTCTTC	1 cut(s)	94
BstAPI	GCANNNNNTGC	2 cut(s)	338, 347
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	5, 25, 236, 327
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 347
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	141, 301
Bsu15I	ATCGAT	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	535
BtsIMutI	CAGTG	3 cut(s)	33, 187, 411
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	535
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	22, 53, 74, 154, 240, 486
CviKI_1	RGCY	6 cut(s)	22, 53, 74, 154, 240, 486
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	4 cut(s)	5, 25, 236, 327
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	92, 516
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	14, 78, 139, 531
FaqI	GGGAC	2 cut(s)	269, 304
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	155, 171, 315
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	155, 171, 315
FspBI	CTAG	2 cut(s)	450, 503
GluI	GCNGC	3 cut(s)	155, 171, 315
GsuI	CTGGAG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	86, 102, 470
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	134, 213, 279
Hpy188I	TCNGA	5 cut(s)	328, 370, 463, 475, 526
Hpy188III	TCNNGA	3 cut(s)	65, 125, 289
Hpy8I	GTNNAC	3 cut(s)	134, 213, 279
HpyAV	CCTTC	2 cut(s)	116, 155
HpyCH4III	ACNGT	3 cut(s)	182, 208, 233
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	134, 245, 341, 377, 389, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 347
HpyF3I	CTNAG	4 cut(s)	5, 25, 236, 327
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	141, 301
LweI	GCATC	3 cut(s)	301, 467, 505
MaeI	CTAG	2 cut(s)	450, 503
MaeII	ACGT	1 cut(s)	446
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	3 cut(s)	81, 432, 509
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	76, 136
MluCI	AATT	4 cut(s)	36, 333, 378, 391
MlyI	GAGTC	2 cut(s)	80, 96
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	52, 246, 322, 428
Mph1103I	ATGCAT	1 cut(s)	460
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	338, 347
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	156, 172, 316
PleI	GAGTC	2 cut(s)	80, 96
PpsI	GAGTC	2 cut(s)	80, 96
Psp124BI	GAGCTC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	76
SatI	GCNGC	3 cut(s)	155, 171, 315
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	80, 96
SduI	GDGCHC	2 cut(s)	76, 136
SetI	ASST	7 cut(s)	76, 118, 156, 192, 242, 439, 449
SfaNI	GCATC	3 cut(s)	301, 467, 505
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	36, 333, 378, 391
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	450, 503
SstI	GAGCTC	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	182, 208, 233
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	535
TasI	AATT	4 cut(s)	36, 333, 378, 391
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	3 cut(s)	33, 187, 411
TseI	GCWGC	2 cut(s)	154, 314
TspRI	CASTG	3 cut(s)	33, 187, 411
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	36, 391
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	450, 503
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.