Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000281.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

102087 .. 104673

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000281.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgcttacagttcttgaaagaatcggagatgtattcgttgcatggttgcccatgtatggcgaggcaaaggttgccattttcatctatctttgggctgctccaactgcgctgtcgaagagacatgctgatggttcattgccaattgaagatttcaacatagtacttgaaaatcagagtgggaagaaagtacaaatgggatcggagactgatcagcgggcaatcatgatgagcctgatgttacataccaatgcaaagcaactgattaaagcacaaaattacaaagatgcaatggaagtgctcagcatggaggagctggtcgataatccttctatactgcaaatcgatatggtttggtgttatttcatgcttagagacatcaactggctctcagtggcaagaattcgccttgagaaagccagagaaggtcttgaacgagctcatggaaaggactcttctcgtgttagactcctccaggcgggtcgttatccagagcgtgcactatatttgatactggagctgctggaaggggtggcggcgtatcaccgtggtcaggttgataagtcaatgaaggtgttgacttctgtacaagagttgttcacccaggtaattggaaaggagaagggccatgtcatgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

212

Amino Acids

24.22

Weight (kDa)

7.03

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	214, 476, 533
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	399
AfaI	GTAC	3 cut(s)	162, 189, 585
AfiI	CCNNNNNNNGG	3 cut(s)	56, 475, 550
AgsI	TTSAA	5 cut(s)	17, 146, 154, 167, 431
AjnI	CCWGG	2 cut(s)	471, 600
AluBI	AGCT	3 cut(s)	313, 437, 517
AluI	AGCT	3 cut(s)	313, 437, 517
Alw21I	GWGCWC	3 cut(s)	300, 439, 499
Alw26I	GTCTC	3 cut(s)	112, 197, 366
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	622
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	95, 517
ApoI	RAATTY	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	533, 589
BaeGI	GKGCMC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	3 cut(s)	300, 439, 499
BbvI	GCAGC	2 cut(s)	82, 504
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	473, 602
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	112, 197, 366
BisI	GCNGC	3 cut(s)	96, 518, 534
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	97, 519, 535
BmcAI	AGTACT	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	473, 602
BmgT120I	GGNCC	1 cut(s)	622
BmrFI	CCNGG	2 cut(s)	473, 602
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	2 cut(s)	455, 533
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	544, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 475, 550
Bse1I	ACTGG	2 cut(s)	386, 516
Bse3DI	GCAATG	2 cut(s)	134, 294
BseBI	CCWGG	2 cut(s)	473, 602
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	544, 600
BseLI	CCNNNNNNNGG	3 cut(s)	56, 475, 550
BseMI	GCAATG	2 cut(s)	134, 294
BseMII	CTCAG	2 cut(s)	313, 402
BseNI	ACTGG	2 cut(s)	386, 516
BseRI	GAGGAG	2 cut(s)	323, 458
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	82, 504
BshFI	GGCC	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	3 cut(s)	300, 439, 499
BslI	CCNNNNNNNGG	3 cut(s)	56, 475, 550
BsmAI	GTCTC	3 cut(s)	112, 197, 366
BsnI	GGCC	1 cut(s)	624
Bsp1286I	GDGCHC	3 cut(s)	300, 439, 499
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	197, 208
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	214, 476, 533
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	312, 401
BspDI	ATCGAT	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	134, 294
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	386, 516
BssECI	CCNNGG	2 cut(s)	544, 600
BssMI	GATC	2 cut(s)	197, 208
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	473, 602
Bst4CI	ACNGT	2 cut(s)	10, 545
Bst6I	CTCTTC	2 cut(s)	110, 457
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	216, 495
BstDEI	CTNAG	3 cut(s)	299, 368, 388
BstDSI	CCRYGG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	200, 211
BstMAI	GTCTC	3 cut(s)	112, 197, 366
BstMBI	GATC	2 cut(s)	197, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 104
BstNI	CCWGG	2 cut(s)	473, 602
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	471, 600
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	82, 504
BstXI	CCANNNNNNTGG	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	396, 634
Cac8I	GCNNGC	2 cut(s)	216, 495
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	622
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	161, 188, 584
CviAII	CATG	9 cut(s)	42, 52, 122, 223, 304, 364, 440, 626, 631
CviJI	RGCY	8 cut(s)	95, 231, 313, 385, 416, 437, 517, 624
CviKI_1	RGCY	8 cut(s)	95, 231, 313, 385, 416, 437, 517, 624
CviQI	GTAC	3 cut(s)	161, 188, 584
DdeI	CTNAG	3 cut(s)	299, 368, 388
DpnI	GATC	2 cut(s)	199, 210
DpnII	GATC	2 cut(s)	197, 208
Eam1104I	CTCTTC	2 cut(s)	110, 457
EarI	CTCTTC	2 cut(s)	110, 457
Ecl136II	GAGCTC	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	471, 600
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	9 cut(s)	45, 55, 125, 226, 307, 367, 443, 629, 634
FatI	CATG	9 cut(s)	41, 51, 121, 222, 303, 363, 439, 625, 630
FauI	CCCGC	2 cut(s)	207, 469
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	96, 518, 534
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	3 cut(s)	96, 518, 534
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	96, 518, 534
GsuI	CTGGAG	2 cut(s)	455, 533
HaeIII	GGCC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	9 cut(s)	45, 55, 125, 226, 307, 367, 443, 629, 634
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	3 cut(s)	21, 449, 465
HphI	GGTGA	2 cut(s)	533, 589
Hpy166II	GTNNAC	3 cut(s)	497, 576, 597
Hpy188I	TCNGA	3 cut(s)	26, 174, 202
Hpy188III	TCNNGA	4 cut(s)	14, 223, 428, 488
Hpy8I	GTNNAC	3 cut(s)	497, 576, 597
HpyAV	CCTTC	5 cut(s)	336, 416, 518, 562, 613
HpyCH4III	ACNGT	2 cut(s)	10, 545
HpyCH4V	TGCA	6 cut(s)	41, 251, 287, 337, 497, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 104
HpyF3I	CTNAG	3 cut(s)	299, 368, 388
Hsp92II	CATG	9 cut(s)	45, 55, 125, 226, 307, 367, 443, 629, 634
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	197, 208
LmnI	GCTCC	3 cut(s)	103, 310, 514
Lsp1109I	GCAGC	2 cut(s)	82, 504
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	2 cut(s)	199, 210
MboI	GATC	2 cut(s)	197, 208
MboII	GAAGA	4 cut(s)	127, 158, 193, 444
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	300, 439, 499
MluCI	AATT	4 cut(s)	141, 274, 399, 606
MlyI	GAGTC	2 cut(s)	443, 459
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	55, 301, 479
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	126, 246
MspA1I	CMGCKG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	473, 602
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	473, 602
MwoI	GCNNNNNNNGC	2 cut(s)	71, 104
NdeII	GATC	2 cut(s)	197, 208
NlaIII	CATG	9 cut(s)	45, 55, 125, 226, 307, 367, 443, 629, 634
NspI	RCATGY	1 cut(s)	125
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	97, 519, 535
PleI	GAGTC	2 cut(s)	443, 459
PpsI	GAGTC	2 cut(s)	443, 459
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	471, 600
PspGI	CCWGG	2 cut(s)	471, 600
PspPI	GGNCC	1 cut(s)	622
RsaI	GTAC	3 cut(s)	162, 189, 585
RsaNI	GTAC	3 cut(s)	161, 188, 584
RseI	CAYNNNNRTG	2 cut(s)	126, 246
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	96, 518, 534
Sau3AI	GATC	2 cut(s)	197, 208
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	1 cut(s)	162
SchI	GAGTC	2 cut(s)	443, 459
ScrFI	CCNGG	2 cut(s)	473, 602
SduI	GDGCHC	3 cut(s)	300, 439, 499
SetI	ASST	8 cut(s)	72, 315, 427, 439, 519, 555, 573, 606
SfaNI	GCATC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	126, 246
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	141, 274, 399, 606
SsiI	CCGC	3 cut(s)	214, 476, 533
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	2 cut(s)	471, 600
TaaI	ACNGT	2 cut(s)	10, 545
TaqI	TCGA	3 cut(s)	113, 318, 342
TasI	AATT	4 cut(s)	141, 274, 399, 606
TatI	WGTACW	3 cut(s)	160, 187, 583
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	95, 517
TspDTI	ATGAA	4 cut(s)	70, 123, 352, 581
TspRI	CASTG	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.