Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

16491143 .. 16493343

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTTGGATATGCTGGATTGTCGATCATAGCGAAATTCGCACTGAACCAAGGCATGAGTCCTCACGTTCTAGCGTCGTATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTTCTTGGATAGAAAAATACGGCCGAAGATGACGCTATCCATCTTCTTCAAGATATTGTTGCTTGGGTTATTGGAACCAACAATTGATCAGAACTTATACTACACTGGTATGAAGTACACTTCCGCCACTTTCACAGCTGCAATGACAAATGTTCTTCCTGCCTTTGCCTTTATTATGGCATGGATCTTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGGAACAATTGTGACAGTTGGTGGAGCAATGCTTATGACTGTTGTGAAAGGACCTTTAATTCCTTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACTCATCCAATACCGGAGTCAAACAAGACCTAACCAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTATCAATCTCCAAGCGATCACGCTTAAGTCGTACCCTGTAGAGCTATCCTTGACAGCTTACATATGTTTTTTGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGAGGAAATCCATCTGCGTGGGCCATCCACTTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGAGTCATATGTTCAGGGATTGGTTACTACGTTCAAGGAGTGATAATGAAAACTCGTGGACCCGTGTTTGTTACTGCCTTCAATCCATTGAGCATGGTCATTGTTGCGATCTTGGGGTCTATAATTCTTGCTGAGGTTATGTTCCTTGGAAGGATTCTTGGAGCAATAGTGATAGTTCTTGGACTCTATTCGGTTTTGTGGGGAAAAAGCAAAGACGAACCATCTTCATCATTTTCAGACATGGACAAGGAGCTACCACTTAGTACACCACAAATTGTGCTCCCATCAAAAGCAAATGCAAAAATGGACACAAATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

374

Amino Acids

40.67

Weight (kDa)

9.35

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 148	5.8e-15	EamA-like transporter family
EamA	PF00892	181 - 320	4.5e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	3 cut(s)	284, 620, 1027
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	217, 671, 698, 797, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	5 cut(s)	305, 631, 644, 749, 1015
AluI	AGCT	5 cut(s)	305, 631, 644, 749, 1015
Alw21I	GWGCWC	1 cut(s)	1044
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	1096
AoxI	GGCC	4 cut(s)	188, 579, 720, 1100
ApeKI	GCWGC	2 cut(s)	305, 749
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	4 cut(s)	458, 579, 720, 821
AvaI	CYCGRG	1 cut(s)	1096
AvaII	GGWCC	2 cut(s)	458, 821
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	1044
BbvCI	CCTCAGC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	292, 736
BccI	CCATC	5 cut(s)	215, 718, 731, 991, 1054
BceAI	ACGGC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	3 cut(s)	116, 407, 746
BfmI	CTRYAG	1 cut(s)	624
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	2 cut(s)	306, 750
BlsI	GCNGC	2 cut(s)	307, 751
Bme18I	GGWCC	2 cut(s)	458, 821
BmeT110I	CYCGRG	1 cut(s)	1096
BmgT120I	GGNCC	4 cut(s)	458, 579, 720, 821
BmiI	GGNNCC	2 cut(s)	243, 823
BmsI	GCATC	1 cut(s)	1069
Bpu10I	CCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	94, 476, 907
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	3 cut(s)	150, 315, 441
BseDI	CCNNGG	3 cut(s)	94, 476, 907
BseGI	GGATG	2 cut(s)	509, 723
BseMI	GCAATG	3 cut(s)	150, 315, 441
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	292, 736
BseYI	CCCAGC	1 cut(s)	576
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	190, 581, 722, 1102
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	1044
BsiHKCI	CYCGRG	1 cut(s)	1096
BsiSI	CCGG	2 cut(s)	519, 582
BsnI	GGCC	4 cut(s)	190, 581, 722, 1102
BsoBI	CYCGRG	1 cut(s)	1096
Bsp1286I	GDGCHC	1 cut(s)	1044
Bsp143I	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	190, 581, 722, 1102
BspCNI	CTCAG	1 cut(s)	886
BspLI	GGNNCC	2 cut(s)	243, 823
BspPI	GGATC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	611
BsrDI	GCAATG	3 cut(s)	150, 315, 441
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	94, 476, 907
BssMI	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	3 cut(s)	94, 476, 907
Bst2BI	CACGAG	1 cut(s)	816
Bst4CI	ACNGT	3 cut(s)	34, 424, 448
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	894, 1022
BstF5I	GGATG	2 cut(s)	509, 723
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	6 cut(s)	72, 256, 354, 606, 873, 1095
BstMBI	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 161
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	2 cut(s)	292, 736
BstX2I	RGATCY	1 cut(s)	351
BstXI	CCANNNNNNTGG	2 cut(s)	717, 730
BstYI	RGATCY	1 cut(s)	351
BstZI	CGGCCG	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	190, 581, 722, 1102
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	509, 723
BtsIMutI	CAGTG	2 cut(s)	86, 270
Cac8I	GCNNGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	4 cut(s)	458, 579, 720, 821
CseI	GACGC	2 cut(s)	108, 208
Csp6I	GTAC	3 cut(s)	283, 619, 1026
CviAII	CATG	5 cut(s)	15, 100, 348, 856, 1003
CviQI	GTAC	3 cut(s)	283, 619, 1026
DdeI	CTNAG	2 cut(s)	894, 1022
DpnI	GATC	6 cut(s)	71, 255, 353, 605, 872, 1094
DpnII	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	188
EagI	CGGCCG	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	188
Eco130I	CCWWGG	3 cut(s)	94, 476, 907
Eco147I	AGGCCT	1 cut(s)	1102
Eco47I	GGWCC	2 cut(s)	458, 821
Eco52I	CGGCCG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	1096
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	3 cut(s)	94, 476, 907
ErhI	CCWWGG	3 cut(s)	94, 476, 907
FaeI	CATG	5 cut(s)	18, 103, 351, 859, 1006
FatI	CATG	5 cut(s)	14, 99, 347, 855, 1002
FauNDI	CATATG	2 cut(s)	650, 770
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	306, 750
FokI	GGATG	2 cut(s)	496, 710
Fsp4HI	GCNGC	2 cut(s)	306, 750
FspBI	CTAG	3 cut(s)	116, 407, 746
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	2 cut(s)	306, 750
GsaI	CCCAGC	1 cut(s)	580
HaeIII	GGCC	4 cut(s)	190, 581, 722, 1102
HapII	CCGG	2 cut(s)	519, 582
HgaI	GACGC	2 cut(s)	108, 208
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	5 cut(s)	18, 103, 351, 859, 1006
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	9 cut(s)	103, 403, 506, 522, 734, 765, 916, 945, 1115
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	519, 582
Hpy166II	GTNNAC	4 cut(s)	285, 373, 821, 1028
Hpy188I	TCNGA	2 cut(s)	258, 1000
Hpy188III	TCNNGA	5 cut(s)	217, 379, 491, 503, 1096
Hpy8I	GTNNAC	4 cut(s)	285, 373, 821, 1028
Hpy99I	CGWCG	2 cut(s)	124, 140
HpyAV	CCTTC	3 cut(s)	361, 850, 906
HpyCH4III	ACNGT	3 cut(s)	34, 424, 448
HpyCH4IV	ACGT	3 cut(s)	111, 375, 792
HpyCH4V	TGCA	3 cut(s)	308, 1061, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 161
HpyF3I	CTNAG	2 cut(s)	894, 1022
HpySE526I	ACGT	3 cut(s)	111, 375, 792
Hsp92II	CATG	5 cut(s)	18, 103, 351, 859, 1006
HspAI	GCGC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
LmnI	GCTCC	5 cut(s)	160, 431, 923, 1012, 1047
LpnPI	CCDG	8 cut(s)	45, 258, 339, 532, 562, 595, 636, 762
Lsp1109I	GCAGC	2 cut(s)	292, 736
LweI	GCATC	1 cut(s)	1069
MaeI	CTAG	3 cut(s)	116, 407, 746
MaeII	ACGT	3 cut(s)	111, 375, 792
MaeIII	GTNAC	3 cut(s)	418, 785, 832
MalI	GATC	6 cut(s)	71, 255, 353, 605, 872, 1094
MboI	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
MboII	GAAGA	5 cut(s)	202, 205, 205, 314, 978
MfeI	CAATTG	2 cut(s)	249, 414
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	1044
MluCI	AATT	9 cut(s)	47, 80, 144, 249, 414, 465, 740, 885, 1035
MlyI	GAGTC	5 cut(s)	112, 500, 531, 774, 939
MnlI	CCTC	6 cut(s)	117, 498, 563, 695, 889, 1092
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	4 cut(s)	8, 372, 464, 612
MslI	CAYNNNNRTG	3 cut(s)	275, 680, 715
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	2 cut(s)	519, 582
MunI	CAATTG	2 cut(s)	249, 414
MwoI	GCNNNNNNNGC	2 cut(s)	83, 161
NdeI	CATATG	2 cut(s)	650, 770
NdeII	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
NlaIII	CATG	5 cut(s)	18, 103, 351, 859, 1006
NlaIV	GGNNCC	2 cut(s)	243, 823
NmuCI	GTSAC	1 cut(s)	418
OliI	CACNNNNGTG	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	1096
PceI	AGGCCT	1 cut(s)	1102
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 614
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	403, 734, 916, 1115
PkrI	GCNGC	2 cut(s)	307, 751
PleI	GAGTC	5 cut(s)	111, 500, 530, 773, 939
PpsI	GAGTC	5 cut(s)	111, 500, 530, 773, 939
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	243, 823
PspPI	GGNCC	4 cut(s)	458, 579, 720, 821
PspPPI	RGGWCCY	1 cut(s)	458
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	3 cut(s)	284, 620, 1027
RsaNI	GTAC	3 cut(s)	283, 619, 1026
RseI	CAYNNNNRTG	3 cut(s)	275, 680, 715
SaqAI	TTAA	4 cut(s)	8, 372, 464, 612
SatI	GCNGC	2 cut(s)	306, 750
Sau3AI	GATC	6 cut(s)	69, 253, 351, 603, 870, 1092
Sau96I	GGNCC	4 cut(s)	458, 579, 720, 821
SchI	GAGTC	5 cut(s)	112, 500, 531, 774, 939
SduI	GDGCHC	1 cut(s)	1044
SfaNI	GCATC	1 cut(s)	1069
SfcI	CTRYAG	1 cut(s)	624
Sfr274I	CTCGAG	1 cut(s)	1096
SinI	GGWCC	2 cut(s)	458, 821
SlaI	CTCGAG	1 cut(s)	1096
SmiMI	CAYNNNNRTG	3 cut(s)	275, 680, 715
SmlI	CTYRAG	3 cut(s)	362, 611, 1096
SmoI	CTYRAG	3 cut(s)	362, 611, 1096
Sse9I	AATT	9 cut(s)	47, 80, 144, 249, 414, 465, 740, 885, 1035
SseBI	AGGCCT	1 cut(s)	1102
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	3 cut(s)	116, 407, 746
StuI	AGGCCT	1 cut(s)	1102
StyI	CCWWGG	3 cut(s)	94, 476, 907
TaaI	ACNGT	3 cut(s)	34, 424, 448
TaiI	ACGT	3 cut(s)	114, 378, 795
TaqI	TCGA	2 cut(s)	68, 1097
TasI	AATT	9 cut(s)	47, 80, 144, 249, 414, 465, 740, 885, 1035
TatI	WGTACW	2 cut(s)	282, 1025
TfiI	GAWTC	4 cut(s)	403, 734, 916, 1115
Tru1I	TTAA	4 cut(s)	8, 372, 464, 612
Tru9I	TTAA	4 cut(s)	8, 372, 464, 612
TscAI	CASTG	2 cut(s)	93, 277
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	305, 749
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	6 cut(s)	16, 139, 293, 488, 824, 978
TspRI	CASTG	2 cut(s)	93, 277
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	458, 821
XapI	RAATTY	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	1096
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	3 cut(s)	116, 407, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.