Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11006766 .. 11007940

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCGCCAAGATATTGCAGCTTAGCCTCGACCCTGTGCTTACCCAGAACCTATACTATATAGGAATGAAGCACTCTATAGCCACTTTCTCATCTGCCATGTCCAACATTCTTCCTGCTTTTGCATTTTTAATGGCCTGGATTTTCCGTCAAAGGCCCTTCTTTGAGTTTACCATGGGCCAAAGTCATCAACAATCGCAGAGTCACTCAGACGACAAGAACCTTGTTAAGGGTGCTTTATTCATGTCAGCAGCTTGTCTCTCCTGGTCTGTTTTCATTGTTTTGCAAACATATACATTAAGGTCATACCCTTGTCAGCTCTCCCTCTCAACCTTGATATGTTTCTGGTGTACGGTGGAAGCAACAGTTCTAGCTCTCGTAATGGAATGGATAAACAGTGCAGCATGGTCTATATACTTGGATGTCAAACTTTTAACAGCTGCTTGCAGGGGAATACTCTCAGGGGTTGCTTATTGTCTTATAGGGATTGTAGTGAAGGAAAAGGGACCTGTTTTCTATTCTGCTTTTCATCCCTTAGGCACTATAATCGTTGCAATTTTGGGCTCCTTTGTTTTAGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

195

Amino Acids

21.57

Weight (kDa)

8.22

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	137, 263
AluBI	AGCT	5 cut(s)	22, 254, 319, 374, 440
AluI	AGCT	5 cut(s)	22, 254, 319, 374, 440
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	4 cut(s)	3, 135, 155, 178
ApeKI	GCWGC	4 cut(s)	19, 251, 401, 440
AspS9I	GGNCC	3 cut(s)	156, 178, 506
AvaII	GGWCC	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	566
BbvI	GCAGC	4 cut(s)	31, 263, 413, 427
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	139, 265
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	5 cut(s)	6, 20, 252, 402, 441
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	5 cut(s)	7, 21, 253, 403, 442
Bme1390I	CCNGG	2 cut(s)	139, 265
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	156, 178, 506
BmiI	GGNNCC	2 cut(s)	507, 565
BmrFI	CCNGG	2 cut(s)	139, 265
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	139, 265
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	427, 529
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	222, 474
BseXI	GCAGC	4 cut(s)	31, 263, 413, 427
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	5, 137, 157, 180
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	5, 137, 157, 180
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	4 cut(s)	5, 137, 157, 180
BspCNI	CTCAG	2 cut(s)	221, 473
BspLI	GGNNCC	2 cut(s)	507, 565
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	139, 265
Bst4CI	ACNGT	3 cut(s)	355, 367, 398
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	23, 208, 460, 535
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	427, 529
BstMAI	GTCTC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	139, 265
BstSCI	CCNGG	2 cut(s)	137, 263
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	31, 263, 413, 427
Bsu36I	CCTNAGG	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	5, 137, 157, 180
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	427, 529
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	445
Cfr13I	GGNCC	3 cut(s)	156, 178, 506
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	4 cut(s)	100, 175, 244, 405
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	23, 208, 460, 535
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	535
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	2 cut(s)	156, 506
EcoRII	CCWGG	2 cut(s)	137, 263
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	103, 178, 247, 408
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	4 cut(s)	99, 174, 243, 404
Fnu4HI	GCNGC	5 cut(s)	6, 20, 252, 402, 441
FokI	GGATG	2 cut(s)	434, 516
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	5 cut(s)	6, 20, 252, 402, 441
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	5 cut(s)	6, 20, 252, 402, 441
HaeIII	GGCC	4 cut(s)	5, 137, 157, 180
Hin1II	CATG	4 cut(s)	103, 178, 247, 408
HinfI	GANTC	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	171, 351
Hpy188I	TCNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	171, 351
HpyAV	CCTTC	2 cut(s)	169, 490
HpyCH4III	ACNGT	3 cut(s)	355, 367, 398
HpyCH4V	TGCA	6 cut(s)	19, 125, 286, 401, 447, 554
HpyF3I	CTNAG	4 cut(s)	23, 208, 460, 535
Hsp92II	CATG	4 cut(s)	103, 178, 247, 408
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	4 cut(s)	31, 263, 413, 427
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	38, 335
MseI	TTAA	4 cut(s)	131, 228, 299, 434
MspA1I	CMGCKG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	139, 265
MvaI	CCWGG	2 cut(s)	139, 265
NcoI	CCATGG	1 cut(s)	174
NlaIII	CATG	4 cut(s)	103, 178, 247, 408
NlaIV	GGNNCC	2 cut(s)	507, 565
NmuCI	GTSAC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	7, 21, 253, 403, 442
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	137, 263
PspGI	CCWGG	2 cut(s)	137, 263
PspN4I	GGNNCC	2 cut(s)	507, 565
PspPI	GGNCC	3 cut(s)	156, 178, 506
PspPPI	RGGWCCY	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	131, 228, 299, 434
SatI	GCNGC	5 cut(s)	6, 20, 252, 402, 441
Sau96I	GGNCC	3 cut(s)	156, 178, 506
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	139, 265
SduI	GDGCHC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	137, 263
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	355, 367, 398
TaqI	TCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	555
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	131, 228, 299, 434
Tru9I	TTAA	4 cut(s)	131, 228, 299, 434
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	19, 251, 401, 440
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	83, 232, 265, 518
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.