Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

11837239 .. 11839724

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGGTTGATCCGCCGGGCAAAGCTTGTGTTAGCTGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCAATTTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTAGGAATTCAAGACCTCAGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACTTGTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTTTCTGGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTGATGGGGACGGTCATCACAGTCGGGGGAGCAACTGTCTTGACTCTAGTTAGAGGTCCCTCTTTGTGTCTACCATGGGCCAATGAAGAAGAAATAAATCCTCATCAATCTGCGCAATGCTATTCAGGTCAGAGAGACCTTGTGAAAGGAGCTCTATTTATCTCAGGAGCTTGCTTCTGCTGGTCTTGGTTTGTCATTTTGCAAGCAATTATCTTAAGATCCTACCCTTGTCAGCTCTCTCTCACAGCAATGATATGCTTTTGGGGTATGGTGGAAGGAGCAATACTGGCTTTTGTAGTTGAAAGGGGACATAGTGGAGCAATGCAATCTGTTGCTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCTGTTTTTTACTCGGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTATCTTGGGAGTGTTATCGGAGCTGCTGTAATCATCATTGGTCTGTATCTCATTCTCTGGGGAAAAGCAAAGGACCAGTCTCCTCCATCACAAAGATCCATGAAAATAACTAACCGGTCTCTCTCTCTAACCCACCAACCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

325

Amino Acids

35.79

Weight (kDa)

9.64

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 131	8.1e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	1 cut(s)	13
AclI	AACGTT	1 cut(s)	269
AclWI	GGATC	3 cut(s)	4, 588, 921
AcoI	YGGCCR	2 cut(s)	135, 780
AcsI	RAATTY	2 cut(s)	154, 256
AfaI	GTAC	2 cut(s)	128, 239
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflII	CTTAAG	2 cut(s)	350, 589
AgeI	ACCGGT	1 cut(s)	945
AgsI	TTSAA	2 cut(s)	159, 677
AjnI	CCWGG	2 cut(s)	320, 801
AluBI	AGCT	7 cut(s)	25, 35, 52, 527, 545, 610, 854
AluI	AGCT	7 cut(s)	25, 35, 52, 527, 545, 610, 854
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	504, 915, 954
AlwI	GGATC	3 cut(s)	4, 588, 921
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	135, 318, 453, 780
ApeKI	GCWGC	4 cut(s)	49, 295, 710, 854
ApoI	RAATTY	2 cut(s)	154, 256
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AsiGI	ACCGGT	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	5 cut(s)	177, 431, 453, 749, 904
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	4 cut(s)	177, 431, 749, 904
BaeI	ACNNNNGTAYC	2 cut(s)	815, 848
BalI	TGGCCA	2 cut(s)	137, 782
BanII	GRGCYC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	4 cut(s)	61, 282, 697, 841
BccI	CCATC	4 cut(s)	188, 373, 718, 925
BciT130I	CCWGG	2 cut(s)	322, 803
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	504, 915, 954
BfaI	CTAG	1 cut(s)	422
BfrI	CTTAAG	2 cut(s)	350, 589
BisI	GCNGC	4 cut(s)	50, 296, 711, 855
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	4 cut(s)	51, 297, 712, 856
Bme1390I	CCNGG	3 cut(s)	17, 322, 803
Bme18I	GGWCC	4 cut(s)	177, 431, 749, 904
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	5 cut(s)	177, 431, 453, 749, 904
BmiI	GGNNCC	3 cut(s)	433, 750, 808
BmrFI	CCNGG	3 cut(s)	17, 322, 803
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	2 cut(s)	504, 954
BsaJI	CCNNGG	3 cut(s)	449, 777, 802
BsaWI	WCCGGW	1 cut(s)	945
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 843, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	666, 907
Bse3DI	GCAATG	5 cut(s)	138, 288, 497, 630, 702
BseBI	CCWGG	2 cut(s)	322, 803
BseDI	CCNNGG	3 cut(s)	449, 777, 802
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	5 cut(s)	138, 288, 497, 630, 702
BseMII	CTCAG	3 cut(s)	179, 194, 552
BseNI	ACTGG	2 cut(s)	666, 907
BseRI	GAGGAG	1 cut(s)	903
BseXI	GCAGC	4 cut(s)	61, 282, 697, 841
BseYI	CCCAGC	1 cut(s)	62
BsgI	GTGCAG	2 cut(s)	68, 344
BshFI	GGCC	4 cut(s)	137, 320, 455, 782
BshTI	ACCGGT	1 cut(s)	945
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	16, 946
BslFI	GGGAC	4 cut(s)	397, 417, 696, 762
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	3 cut(s)	504, 915, 954
BsmFI	GGGAC	4 cut(s)	397, 417, 696, 762
BsnI	GGCC	4 cut(s)	137, 320, 455, 782
Bso31I	GGTCTC	2 cut(s)	504, 954
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	9, 593, 926
Bsp1720I	GCTNAGC	1 cut(s)	203
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	4 cut(s)	137, 320, 455, 782
BspCNI	CTCAG	3 cut(s)	178, 195, 551
BspLI	GGNNCC	3 cut(s)	433, 750, 808
BspPI	GGATC	3 cut(s)	4, 588, 921
BspTI	CTTAAG	2 cut(s)	350, 589
BspTNI	GGTCTC	2 cut(s)	504, 954
BsrDI	GCAATG	5 cut(s)	138, 288, 497, 630, 702
BsrFI	RCCGGY	1 cut(s)	945
BsrI	ACTGG	2 cut(s)	666, 907
BssAI	RCCGGY	1 cut(s)	945
BssECI	CCNNGG	3 cut(s)	449, 777, 802
BssMI	GATC	3 cut(s)	9, 593, 926
BssT1I	CCWWGG	2 cut(s)	449, 777
Bst2UI	CCWGG	2 cut(s)	322, 803
Bst4CI	ACNGT	4 cut(s)	388, 397, 412, 787
BstAFI	CTTAAG	2 cut(s)	350, 589
BstC8I	GCNNGC	3 cut(s)	300, 547, 579
BstDEI	CTNAG	3 cut(s)	165, 203, 538
BstDSI	CCRYGG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	12, 596, 929
BstMAI	GTCTC	3 cut(s)	504, 915, 954
BstMBI	GATC	3 cut(s)	9, 593, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	2 cut(s)	322, 803
BstSCI	CCNGG	3 cut(s)	15, 320, 801
BstV1I	GCAGC	4 cut(s)	61, 282, 697, 841
BstX2I	RGATCY	2 cut(s)	593, 926
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstYI	RGATCY	2 cut(s)	593, 926
BsuRI	GGCC	4 cut(s)	137, 320, 455, 782
BtgI	CCRYGG	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	300, 547, 579
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	945
Cfr13I	GGNCC	5 cut(s)	177, 431, 453, 749, 904
Csp6I	GTAC	2 cut(s)	127, 238
CspAI	ACCGGT	1 cut(s)	945
CviAII	CATG	3 cut(s)	244, 450, 931
CviQI	GTAC	2 cut(s)	127, 238
DdeI	CTNAG	3 cut(s)	165, 203, 538
DpnI	GATC	3 cut(s)	11, 595, 928
DpnII	GATC	3 cut(s)	9, 593, 926
EaeI	YGGCCR	2 cut(s)	135, 780
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	2 cut(s)	449, 777
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	2 cut(s)	504, 954
Eco47I	GGWCC	4 cut(s)	177, 431, 749, 904
Eco53kI	GAGCTC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	527
EcoO109I	RGGNCCY	2 cut(s)	431, 749
EcoRI	GAATTC	2 cut(s)	154, 256
EcoRII	CCWGG	2 cut(s)	320, 801
EcoT14I	CCWWGG	2 cut(s)	449, 777
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	449, 777
FaeI	CATG	3 cut(s)	247, 453, 934
FaqI	GGGAC	4 cut(s)	397, 417, 696, 762
FatI	CATG	3 cut(s)	243, 449, 930
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	50, 296, 711, 855
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	50, 296, 711, 855
FspBI	CTAG	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	50, 296, 711, 855
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	137, 320, 455, 782
HapII	CCGG	2 cut(s)	16, 946
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	247, 453, 934
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	106, 418
HpaII	CCGG	2 cut(s)	16, 946
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	3 cut(s)	127, 273, 446
Hpy188I	TCNGA	3 cut(s)	168, 507, 851
Hpy188III	TCNNGA	3 cut(s)	159, 415, 540
Hpy8I	GTNNAC	3 cut(s)	127, 273, 446
HpyAV	CCTTC	4 cut(s)	91, 334, 644, 733
HpyCH4III	ACNGT	4 cut(s)	388, 397, 412, 787
HpyCH4IV	ACGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	3 cut(s)	165, 203, 538
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	247, 453, 934
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	9, 593, 926
LmnI	GCTCC	6 cut(s)	404, 524, 542, 653, 692, 851
Lsp1109I	GCAGC	4 cut(s)	61, 282, 697, 841
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	269
MalI	GATC	3 cut(s)	11, 595, 928
MboI	GATC	3 cut(s)	9, 593, 926
MboII	GAAGA	3 cut(s)	265, 473, 476
MfeI	CAATTG	1 cut(s)	827
MflI	RGATCY	2 cut(s)	593, 926
MhlI	GDGCHC	1 cut(s)	529
MlsI	TGGCCA	2 cut(s)	137, 782
MluCI	AATT	5 cut(s)	81, 154, 256, 582, 827
MluNI	TGGCCA	2 cut(s)	137, 782
MlyI	GAGTC	2 cut(s)	115, 412
MnlI	CCTC	5 cut(s)	174, 422, 445, 486, 924
Mox20I	TGGCCA	2 cut(s)	137, 782
MscI	TGGCCA	2 cut(s)	137, 782
MseI	TTAA	3 cut(s)	351, 590, 771
MslI	CAYNNNNRTG	3 cut(s)	248, 623, 788
Msp20I	TGGCCA	2 cut(s)	137, 782
MspCI	CTTAAG	2 cut(s)	350, 589
MspI	CCGG	2 cut(s)	16, 946
MspR9I	CCNGG	3 cut(s)	17, 322, 803
MunI	CAATTG	1 cut(s)	827
MvaI	CCWGG	2 cut(s)	322, 803
MwoI	GCNNNNNNNGC	1 cut(s)	662
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	3 cut(s)	9, 593, 926
NlaIII	CATG	3 cut(s)	247, 453, 934
NlaIV	GGNNCC	3 cut(s)	433, 750, 808
NmeAIII	GCCGAG	1 cut(s)	743
NsbI	TGCGCA	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	175
PinAI	ACCGGT	1 cut(s)	945
PkrI	GCNGC	4 cut(s)	51, 297, 712, 856
PleI	GAGTC	2 cut(s)	114, 412
PpsI	GAGTC	2 cut(s)	114, 412
PpuMI	RGGWCCY	2 cut(s)	431, 749
Psp124BI	GAGCTC	1 cut(s)	529
Psp1406I	AACGTT	1 cut(s)	269
Psp5II	RGGWCCY	2 cut(s)	431, 749
Psp6I	CCWGG	2 cut(s)	320, 801
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	320, 801
PspN4I	GGNNCC	3 cut(s)	433, 750, 808
PspPI	GGNCC	5 cut(s)	177, 431, 453, 749, 904
PspPPI	RGGWCCY	2 cut(s)	431, 749
PsrI	GAACNNNNNNTAC	2 cut(s)	224, 256
PsuI	RGATCY	2 cut(s)	593, 926
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	128, 239
RsaNI	GTAC	2 cut(s)	127, 238
RseI	CAYNNNNRTG	3 cut(s)	248, 623, 788
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	351, 590, 771
SatI	GCNGC	4 cut(s)	50, 296, 711, 855
Sau3AI	GATC	3 cut(s)	9, 593, 926
Sau96I	GGNCC	5 cut(s)	177, 431, 453, 749, 904
SchI	GAGTC	2 cut(s)	115, 412
ScrFI	CCNGG	3 cut(s)	17, 322, 803
SduI	GDGCHC	1 cut(s)	529
SinI	GGWCC	4 cut(s)	177, 431, 749, 904
SmiMI	CAYNNNNRTG	3 cut(s)	248, 623, 788
SmlI	CTYRAG	2 cut(s)	350, 589
SmoI	CTYRAG	2 cut(s)	350, 589
Sse9I	AATT	5 cut(s)	81, 154, 256, 582, 827
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	15, 320, 801
StyI	CCWWGG	2 cut(s)	449, 777
TaaI	ACNGT	4 cut(s)	388, 397, 412, 787
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	3 cut(s)	71, 213, 260
TasI	AATT	5 cut(s)	81, 154, 256, 582, 827
TatI	WGTACW	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	351, 590, 771
Tru9I	TTAA	3 cut(s)	351, 590, 771
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	4 cut(s)	49, 295, 710, 854
TspDTI	ATGAA	4 cut(s)	109, 266, 474, 947
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	175
Vha464I	CTTAAG	2 cut(s)	350, 589
VpaK11BI	GGWCC	4 cut(s)	177, 431, 749, 904
XapI	RAATTY	2 cut(s)	154, 256
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.