Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11083741 .. 11085414

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTCACTCAAGCAAAGCCATTTGTGGCTGTGATTCTGATGCAATTTGGGTTAGCAGGAATGTCCATAATTACAAAATTTGCTCTAAACCAAGGGATGAGCCAACACGTATTAGTTGTCTACAGGCATGCTGTTGCCTTTGTTTTTATAACTCCTTTTGCCCTTTTCTTTGATAGGAAAATAAGGCCAAAGATGAGCCTTTCAGTCTTTGTCAAGATTGTGTTACTCGGCCTATTAGAGCCTGTAATCGACGGGAACTTGTTCTATACTGGGATGAAGCTGACAACAGCAACATTTACAATGGCCATGTGCAATGTTCTTCCTGCCTTTGCATTCATAATGGCTTGGATTTTCAGGCTTGAGATGGTTGATATTAGAAGACTTCACAGCCAGGCAAAGATATTGGGGACCATAGTGACTGTGGGAGGAGCTATGCTTATGACTCTGGCAATTACTCTAAAAGTATACCCTGCTGAGCTCTCACTAACAGCTTGGATATGTTTGATGGGTGCGTTGGAAGGTACCGTGGCAGCTCTAGCTTTTGAGTGGCATAACCCTGCAGCTTGGGCCATACACTTGGATTCTAAGTTGTTAGCTGCTGTTTACGGTGGAGTAATATGTTCTGGAGTGACTTATTATATTCAGGGGATGGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCATTTAATCCCCTATGCATGGTCATTGTAGCCATTTTGAGCTCCATCGCCCTGTCCGAAATACTGTACTTGGGAAGGGTAATGGGAGCAATGGTTATAATAATTGGCCTGTATACGGTCCTCTGGGGTAAAAGTAAGGATCTTCCACAACCAGATTCAGAAGCAGCTGAAGATAAAGTAGCTACAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

292

Amino Acids

31.94

Weight (kDa)

9.02

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 148	3.4e-08	EamA-like transporter family
EamA	PF00892	145 - 269	9.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	149, 782
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	3 cut(s)	120, 465, 797
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	2 cut(s)	523, 752
AfiI	CCNNNNNNNGG	2 cut(s)	703, 799
AflIII	ACRYGT	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	390
Alw21I	GWGCWC	2 cut(s)	480, 728
AlwI	GGATC	1 cut(s)	831
AoxI	GGCC	5 cut(s)	185, 229, 303, 567, 790
ApeKI	GCWGC	4 cut(s)	530, 560, 596, 848
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	521
AspS9I	GGNCC	4 cut(s)	408, 567, 668, 802
AvaII	GGWCC	3 cut(s)	408, 668, 802
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	480, 728
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	2 cut(s)	480, 728
BbvI	GCAGC	4 cut(s)	542, 572, 583, 860
BccI	CCATC	4 cut(s)	358, 499, 643, 737
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	121, 558
BisI	GCNGC	4 cut(s)	531, 561, 597, 849
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	4 cut(s)	532, 562, 598, 850
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	3 cut(s)	408, 668, 802
BmgT120I	GGNCC	4 cut(s)	408, 567, 668, 802
BmiI	GGNNCC	2 cut(s)	409, 523
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	91, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	703, 799
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	319, 780
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	91, 525
BseGI	GGATG	3 cut(s)	102, 279, 654
BseLI	CCNNNNNNNGG	2 cut(s)	703, 799
BseMI	GCAATG	2 cut(s)	319, 780
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	4 cut(s)	542, 572, 583, 860
BshFI	GGCC	5 cut(s)	187, 231, 305, 569, 792
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	2 cut(s)	480, 728
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	703, 799
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	5 cut(s)	187, 231, 305, 569, 792
Bsp1286I	GDGCHC	2 cut(s)	480, 728
Bsp143I	GATC	1 cut(s)	823
Bsp1720I	GCTNAGC	1 cut(s)	474
BspANI	GGCC	5 cut(s)	187, 231, 305, 569, 792
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	409, 523
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	521
BsrDI	GCAATG	2 cut(s)	319, 780
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	91, 525
BssMI	GATC	1 cut(s)	823
BssNAI	GTATAC	2 cut(s)	466, 798
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	2 cut(s)	466, 798
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	6 cut(s)	421, 526, 608, 750, 802, 874
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	474, 585
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	102, 279, 654
BstKTI	GATC	1 cut(s)	826
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 566
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	121, 558
BstV1I	GCAGC	4 cut(s)	542, 572, 583, 860
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	823
BstZ17I	GTATAC	2 cut(s)	466, 798
BsuRI	GGCC	5 cut(s)	187, 231, 305, 569, 792
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	102, 279, 654
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	408, 567, 668, 802
Csp6I	GTAC	2 cut(s)	522, 751
CviAII	CATG	3 cut(s)	128, 307, 703
CviQI	GTAC	2 cut(s)	522, 751
DdeI	CTNAG	2 cut(s)	474, 585
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	2 cut(s)	478, 726
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	480, 728
Eco47I	GGWCC	3 cut(s)	408, 668, 802
Eco53kI	GAGCTC	2 cut(s)	478, 726
Eco57I	CTGAAG	1 cut(s)	873
EcoICRI	GAGCTC	2 cut(s)	478, 726
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	704
EcoT38I	GRGCYC	2 cut(s)	480, 728
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	131, 310, 706
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	127, 306, 702
FblI	GTMKAC	3 cut(s)	120, 465, 797
Fnu4HI	GCNGC	4 cut(s)	531, 561, 597, 849
FokI	GGATG	3 cut(s)	109, 286, 661
FriOI	GRGCYC	2 cut(s)	480, 728
Fsp4HI	GCNGC	4 cut(s)	531, 561, 597, 849
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	4 cut(s)	531, 561, 597, 849
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	5 cut(s)	187, 231, 305, 569, 792
Hin1II	CATG	3 cut(s)	131, 310, 706
HinfI	GANTC	4 cut(s)	34, 442, 581, 839
Hpy166II	GTNNAC	4 cut(s)	121, 466, 604, 798
Hpy188I	TCNGA	3 cut(s)	39, 742, 844
Hpy188III	TCNNGA	2 cut(s)	214, 624
Hpy8I	GTNNAC	4 cut(s)	121, 466, 604, 798
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	512, 652, 753
HpyCH4III	ACNGT	6 cut(s)	421, 526, 608, 750, 802, 874
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	6 cut(s)	43, 312, 332, 560, 686, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 566
HpyF3I	CTNAG	2 cut(s)	474, 585
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	131, 310, 706
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	1 cut(s)	823
LmnI	GCTCC	3 cut(s)	428, 731, 770
Lsp1109I	GCAGC	4 cut(s)	542, 572, 583, 860
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	4 cut(s)	222, 415, 628, 679
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	4 cut(s)	311, 390, 818, 866
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	480, 728
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	5 cut(s)	44, 69, 77, 450, 786
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	419, 659, 815
Mox20I	TGGCCA	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	704
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	2 cut(s)	690, 877
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	536, 566
NdeII	GATC	1 cut(s)	823
NlaIII	CATG	3 cut(s)	131, 310, 706
NlaIV	GGNNCC	2 cut(s)	409, 523
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	3 cut(s)	415, 628, 679
NsiI	ATGCAT	1 cut(s)	704
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	34, 581, 839
PkrI	GCNGC	4 cut(s)	532, 562, 598, 850
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	668
PsiI	TTATAA	2 cut(s)	149, 782
Psp124BI	GAGCTC	2 cut(s)	480, 728
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	409, 523
PspPI	GGNCC	4 cut(s)	408, 567, 668, 802
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	2 cut(s)	523, 752
RsaNI	GTAC	2 cut(s)	522, 751
SacI	GAGCTC	2 cut(s)	480, 728
SaqAI	TTAA	2 cut(s)	690, 877
SatI	GCNGC	4 cut(s)	531, 561, 597, 849
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	4 cut(s)	408, 567, 668, 802
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	480, 728
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	2 cut(s)	121, 558
SinI	GGWCC	3 cut(s)	408, 668, 802
SmlI	CTYRAG	2 cut(s)	9, 359
SmoI	CTYRAG	2 cut(s)	9, 359
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	44, 69, 77, 450, 786
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	2 cut(s)	480, 728
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	6 cut(s)	421, 526, 608, 750, 802, 874
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	44, 69, 77, 450, 786
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	34, 581, 839
Tru1I	TTAA	2 cut(s)	690, 877
Tru9I	TTAA	2 cut(s)	690, 877
TseFI	GTSAC	3 cut(s)	415, 628, 679
TseI	GCWGC	4 cut(s)	530, 560, 596, 848
Tsp45I	GTSAC	3 cut(s)	415, 628, 679
TspDTI	ATGAA	3 cut(s)	290, 325, 671
VpaK11BI	GGWCC	3 cut(s)	408, 668, 802
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	3 cut(s)	120, 465, 797
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.