Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000067.1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

15182 .. 16802

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgtttatggggttgatccgccgggcaaagcttgtgttagctgtgattttggtccagctcgggtatgctgggctttcgataatctcaatgtttgctctaaagaagggaatgagtccttacacattcatcgtgtaccgaatggccattgccactattgttctagctccatttgcattcattttggagaggaattcaagacctcagatgacttggtccatcactgcaaagataatgttgctgagccttttcgaccctgtgcttgaccagaacctgtactacatgggaatgaagaattcgagtgcaacgttcacttctgcaatgtgcaatatgctgcctgcttttgcattttgtctggcctggatttttaggtttgagaaggttagccttaagaaactgcacagcatagcaaaggtgatggggacggtcatcacaatcgggggagcaactgtcttgactctagcaatgcaatctgttgttgcttattatgtgatgggaatggtagtgaaggaaaagggacctgttttttactcggcttttaatcccttggccacagtaatggttgcaatcctgggttcctttgttttagcagaacaattgtaccttgggagtgttatcggagctgctgtaatcatcattggtctgtatctcattctctggggaaaagcaaaggaccagtctcctccatcacagtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

231

Amino Acids

25.36

Weight (kDa)

9.76

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	1 cut(s)	10
AcoI	YGGCCR	2 cut(s)	141, 546
AcsI	RAATTY	2 cut(s)	190, 292
AfaI	GTAC	3 cut(s)	134, 275, 599
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	195
AjnI	CCWGG	2 cut(s)	356, 567
AluBI	AGCT	5 cut(s)	31, 41, 58, 164, 620
AluI	AGCT	5 cut(s)	31, 41, 58, 164, 620
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	141, 354, 546
ApeKI	GCWGC	2 cut(s)	331, 620
ApoI	RAATTY	2 cut(s)	190, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspS9I	GGNCC	4 cut(s)	52, 213, 515, 670
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	52, 213, 515, 670
BaeI	ACNNNNGTAYC	2 cut(s)	581, 614
BalI	TGGCCA	2 cut(s)	143, 548
BbvI	GCAGC	2 cut(s)	318, 607
BccI	CCATC	4 cut(s)	224, 409, 484, 691
BciT130I	CCWGG	2 cut(s)	358, 569
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	2 cut(s)	161, 458
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	332, 621
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	333, 622
Bme1390I	CCNGG	3 cut(s)	23, 358, 569
Bme18I	GGWCC	4 cut(s)	52, 213, 515, 670
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	52, 213, 515, 670
BmiI	GGNNCC	2 cut(s)	516, 574
BmrFI	CCNGG	3 cut(s)	23, 358, 569
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	543, 568, 601
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 609, 639
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	3 cut(s)	144, 324, 468
BseBI	CCWGG	2 cut(s)	358, 569
BseDI	CCNNGG	3 cut(s)	543, 568, 601
BseMI	GCAATG	3 cut(s)	144, 324, 468
BseMII	CTCAG	2 cut(s)	215, 230
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	318, 607
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	143, 356, 548
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	433, 528
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	433, 528
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	143, 356, 548
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	143, 356, 548
BspCNI	CTCAG	2 cut(s)	214, 231
BspLI	GGNNCC	2 cut(s)	516, 574
BspPI	GGATC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	3 cut(s)	144, 324, 468
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	3 cut(s)	543, 568, 601
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	543, 601
Bst2UI	CCWGG	2 cut(s)	358, 569
Bst4CI	ACNGT	4 cut(s)	424, 448, 553, 690
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	201, 239
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	358, 569
BstSCI	CCNGG	3 cut(s)	21, 356, 567
BstV1I	GCAGC	2 cut(s)	318, 607
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	143, 356, 548
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 695
Cac8I	GCNNGC	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	52, 213, 515, 670
Csp6I	GTAC	3 cut(s)	133, 274, 598
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	3 cut(s)	133, 274, 598
DdeI	CTNAG	2 cut(s)	201, 239
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	141, 546
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	543, 601
Eco47I	GGWCC	4 cut(s)	52, 213, 515, 670
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRI	GAATTC	2 cut(s)	190, 292
EcoRII	CCWGG	2 cut(s)	356, 567
EcoT14I	CCWWGG	2 cut(s)	543, 601
ErhI	CCWWGG	2 cut(s)	543, 601
FaeI	CATG	1 cut(s)	283
FaiI	YATR	6 cut(s)	8, 66, 281, 329, 404, 486
FaqI	GGGAC	2 cut(s)	433, 528
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	332, 621
Fsp4HI	GCNGC	2 cut(s)	332, 621
FspBI	CTAG	2 cut(s)	161, 458
GluI	GCNGC	2 cut(s)	332, 621
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	143, 356, 548
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	112, 454
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	133, 309
Hpy188I	TCNGA	2 cut(s)	204, 617
Hpy188III	TCNNGA	2 cut(s)	195, 451
Hpy8I	GTNNAC	2 cut(s)	133, 309
HpyAV	CCTTC	3 cut(s)	97, 370, 499
HpyCH4III	ACNGT	4 cut(s)	424, 448, 553, 690
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	9 cut(s)	173, 224, 302, 317, 324, 344, 397, 466, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	201, 239
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	169, 440, 617
Lsp1109I	GCAGC	2 cut(s)	318, 607
MaeI	CTAG	2 cut(s)	161, 458
MaeII	ACGT	1 cut(s)	305
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	301
MfeI	CAATTG	1 cut(s)	593
MlsI	TGGCCA	2 cut(s)	143, 548
MluCI	AATT	3 cut(s)	190, 292, 593
MluNI	TGGCCA	2 cut(s)	143, 548
MlyI	GAGTC	2 cut(s)	121, 448
MnlI	CCTC	3 cut(s)	180, 210, 690
Mox20I	TGGCCA	2 cut(s)	143, 548
MscI	TGGCCA	2 cut(s)	143, 548
MseI	TTAA	2 cut(s)	387, 537
MslI	CAYNNNNRTG	3 cut(s)	284, 554, 688
Msp20I	TGGCCA	2 cut(s)	143, 548
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	3 cut(s)	23, 358, 569
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	358, 569
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	516, 574
NmeAIII	GCCGAG	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	333, 622
PleI	GAGTC	2 cut(s)	120, 448
PpsI	GAGTC	2 cut(s)	120, 448
PpuMI	RGGWCCY	1 cut(s)	515
Psp1406I	AACGTT	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	356, 567
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	356, 567
PspN4I	GGNNCC	2 cut(s)	516, 574
PspPI	GGNCC	4 cut(s)	52, 213, 515, 670
PspPPI	RGGWCCY	1 cut(s)	515
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PstNI	CAGNNNCTG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	134, 275, 599
RsaNI	GTAC	3 cut(s)	133, 274, 598
RseI	CAYNNNNRTG	3 cut(s)	284, 554, 688
SaqAI	TTAA	2 cut(s)	387, 537
SatI	GCNGC	2 cut(s)	332, 621
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	4 cut(s)	52, 213, 515, 670
SchI	GAGTC	2 cut(s)	121, 448
ScrFI	CCNGG	3 cut(s)	23, 358, 569
SinI	GGWCC	4 cut(s)	52, 213, 515, 670
SmiMI	CAYNNNNRTG	3 cut(s)	284, 554, 688
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	3 cut(s)	190, 292, 593
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	161, 458
StyD4I	CCNGG	3 cut(s)	21, 356, 567
StyI	CCWWGG	2 cut(s)	543, 601
TaaI	ACNGT	4 cut(s)	424, 448, 553, 690
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	3 cut(s)	77, 249, 296
TasI	AATT	3 cut(s)	190, 292, 593
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	387, 537
Tru9I	TTAA	2 cut(s)	387, 537
TscAI	CASTG	2 cut(s)	226, 695
TseI	GCWGC	2 cut(s)	331, 620
TspDTI	ATGAA	3 cut(s)	115, 166, 302
TspRI	CASTG	2 cut(s)	226, 695
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	4 cut(s)	52, 213, 515, 670
XapI	RAATTY	2 cut(s)	190, 292
XspI	CTAG	2 cut(s)	161, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.