Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

56997740 .. 56998391

Gene Structure 652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCATCTGATTTACACACATGCAGGCCAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCATGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTATTGTGGTTGAAAGGGAAAATTCAGAAGCATGGTCCATACACTTCGACTTCAAGTTGCTCGCAGCTGCTCTTCTATCAGGGGCTGTATATTATGTCATGGGGCTGGTTGTGACGAAGAAGGGAACAGTTTTCTACTCTGCCTTTAACCCCTTGGCCACCCTGCTTGTGGCGATTTTGGGATCATTTTTTCTGGCAAAACAATTGTATACTGGAATTTATGAATGTTTTCCCGCTCCTATGTATATTCTCATCGGAGCTGTAACCATTGTGGGAGGCCTCTATCTTGTTCTTTGGGGAAAAGCAAGAGATCAGCCTCCCTCTTTGAATGCCAATGTGGAAGAACCAACTGGAACCCCAACAATAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

160

Amino Acids

17.37

Weight (kDa)

5.44

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	130, 324
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	122, 163, 436
AluBI	AGCT	3 cut(s)	56, 176, 368
AluI	AGCT	3 cut(s)	56, 176, 368
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	25, 264, 385
ApeKI	GCWGC	2 cut(s)	173, 176
ApoI	RAATTY	2 cut(s)	130, 324
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	163, 185
BisI	GCNGC	2 cut(s)	174, 177
BlsI	GCNGC	2 cut(s)	175, 178
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	463
BmsI	GCATC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	325, 463
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	325, 463
BseXI	GCAGC	2 cut(s)	163, 185
BshFI	GGCC	3 cut(s)	27, 266, 387
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	3 cut(s)	27, 266, 387
Bsp143I	GATC	2 cut(s)	290, 418
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	3 cut(s)	27, 266, 387
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	325, 463
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	290, 418
BssNAI	GTATAC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	25, 54, 171
BstKTI	GATC	2 cut(s)	293, 421
BstMBI	GATC	2 cut(s)	290, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	163, 185
BstZ17I	GTATAC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	27, 266, 387
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	25, 54, 171
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	4 cut(s)	20, 65, 141, 208
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	2 cut(s)	292, 420
DpnII	GATC	2 cut(s)	290, 418
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	23, 68, 144, 211
FatI	CATG	4 cut(s)	19, 64, 140, 207
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	174, 177
Fsp4HI	GCNGC	2 cut(s)	174, 177
GluI	GCNGC	2 cut(s)	174, 177
HaeIII	GGCC	3 cut(s)	27, 266, 387
Hin1II	CATG	4 cut(s)	23, 68, 144, 211
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	9, 136, 365
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	89, 223
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	4, 23, 52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	23, 68, 144, 211
Kzo9I	GATC	2 cut(s)	290, 418
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	98, 349, 365
LpnPI	CCDG	9 cut(s)	9, 62, 67, 174, 200, 284, 287, 306, 444
Lsp1109I	GCAGC	2 cut(s)	163, 185
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	220, 370
MalI	GATC	2 cut(s)	292, 420
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	2 cut(s)	290, 418
MboII	GAAGA	3 cut(s)	173, 238, 461
MfeI	CAATTG	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	130, 311, 324
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	377, 398, 435, 439
Mox20I	TGGCCA	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	255, 481
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	290, 418
NlaIII	CATG	4 cut(s)	23, 68, 144, 211
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	175, 178
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	255, 481
SatI	GCNGC	2 cut(s)	174, 177
Sau3AI	GATC	2 cut(s)	290, 418
Sau96I	GGNCC	1 cut(s)	144
SetI	ASST	3 cut(s)	58, 178, 370
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	130, 311, 324
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	130, 311, 324
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	255, 481
Tru9I	TTAA	2 cut(s)	255, 481
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	173, 176
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	130, 324
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.