Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

27803211 .. 27805207

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCATTGCAACTGCCTTGGCAAGTCCATTGGCATGGTACCTAGAGAGACATTCTAGGCCTACAATGACCATCAAGGTCATGGCAAAGATCATGCTGCTAAGCATGTTTGACCCTGTAATGGACCAAAACTTATACTATGTGGGCATGAAGAACTCCAATGCCACATTCACATCGGCCATGTGCAACATGCTTCCGGTGTTTGCATTTGTCATGGCCTGGATTTTCAGGCTGGAGAATGTGGACTACAGACACCCGAGAGGATTGGCCAAGGTTGTAGGAACCTTGGTTACTGTGGTAGGAGCAATCTCCTTACCATGGGACCACGAGAAAAATCATTCTTCACAGCCCGAAGTCAAGGGTGCTTTCTTCCTAACACTAGCCTGCTTCTGCTGGTCCTGTTTCATGATCCTACAAGCTAATGTACTCAAGTCCTACCCCTGCAAGCTCTCTCTCACCGCTTTGATTTGCTTCTGGGGTATGGTGGAAGGAGCAGTGGTGGCTGTTGTGGTTGAAAGGGGGAACTCAGAAGCATGGTCCATACACTTGGACTACAAGTTGCTCGCAGCTGTATATGGGGCTCTTCTATCGGGGGCTGCATATTATGTCATGGGACTGGTTGTGAAGAAGAAGGGACCAGTTTTCTACTCGGCCTTTAACCCCTTGGCCACTCTGCTTGTGGCGATTTTGGGGTCATTTTTTCTGGCAGAACAGTTGTATACTGGGAGCACTAATCATGGACAACTCTGCATACGCACCCTGCAAGAAAACCACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

259

Amino Acids

28.7

Weight (kDa)

8.79

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	1 - 92	2.3e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	719
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	4 cut(s)	3, 177, 267, 666
AfaI	GTAC	2 cut(s)	41, 426
AfiI	CCNNNNNNNGG	2 cut(s)	121, 318
AgsI	TTSAA	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	4 cut(s)	419, 448, 569, 777
AluI	AGCT	4 cut(s)	419, 448, 569, 777
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	7 cut(s)	3, 59, 177, 216, 267, 651, 666
ApeKI	GCWGC	3 cut(s)	97, 566, 596
Asp718I	GGTACC	1 cut(s)	39
AspS9I	GGNCC	5 cut(s)	124, 322, 396, 537, 635
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	5 cut(s)	124, 322, 396, 537, 635
BalI	TGGCCA	3 cut(s)	5, 269, 668
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	583
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	3 cut(s)	84, 578, 583
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	44, 57, 380
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	3 cut(s)	98, 567, 597
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	3 cut(s)	99, 568, 598
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	5 cut(s)	124, 322, 396, 537, 635
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	5 cut(s)	124, 322, 396, 537, 635
BmiI	GGNNCC	4 cut(s)	41, 283, 323, 636
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	732
BmuI	ACTGGG	1 cut(s)	732
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	5 cut(s)	18, 270, 285, 317, 663
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 318
Bse1I	ACTGG	3 cut(s)	621, 638, 727
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	5 cut(s)	18, 270, 285, 317, 663
BseLI	CCNNNNNNNGG	2 cut(s)	121, 318
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	621, 638, 727
BseXI	GCAGC	3 cut(s)	84, 578, 583
BshFI	GGCC	7 cut(s)	5, 61, 179, 218, 269, 653, 668
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	731
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	3 cut(s)	335, 627, 648
BslI	CCNNNNNNNGG	2 cut(s)	121, 318
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	3 cut(s)	335, 627, 648
BsnI	GGCC	7 cut(s)	5, 61, 179, 218, 269, 653, 668
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	583, 731
Bsp143I	GATC	2 cut(s)	90, 408
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	7 cut(s)	5, 61, 179, 218, 269, 653, 668
BspCNI	CTCAG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	4 cut(s)	41, 283, 323, 636
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	621, 638, 727
BssECI	CCNNGG	5 cut(s)	18, 270, 285, 317, 663
BssMI	GATC	2 cut(s)	90, 408
BssNAI	GTATAC	1 cut(s)	720
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	5 cut(s)	18, 270, 285, 317, 663
Bst1107I	GTATAC	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	295, 714
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	385, 446, 564
BstDEI	CTNAG	2 cut(s)	101, 526
BstDSI	CCRYGG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	93, 411
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	90, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	2 cut(s)	109, 193
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	84, 578, 583
BstXI	CCANNNNNNTGG	2 cut(s)	36, 547
BstZ17I	GTATAC	1 cut(s)	720
BsuRI	GGCC	7 cut(s)	5, 61, 179, 218, 269, 653, 668
BtgI	CCRYGG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	3 cut(s)	385, 446, 564
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	5 cut(s)	124, 322, 396, 537, 635
Csp6I	GTAC	2 cut(s)	40, 425
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviQI	GTAC	2 cut(s)	40, 425
DdeI	CTNAG	2 cut(s)	101, 526
DpnI	GATC	2 cut(s)	92, 410
DpnII	GATC	2 cut(s)	90, 408
EaeI	YGGCCR	4 cut(s)	3, 177, 267, 666
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	5 cut(s)	18, 270, 285, 317, 663
Eco147I	AGGCCT	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	5 cut(s)	124, 322, 396, 537, 635
Eco88I	CYCGRG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	5 cut(s)	18, 270, 285, 317, 663
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	5 cut(s)	18, 270, 285, 317, 663
FaqI	GGGAC	3 cut(s)	335, 627, 648
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	98, 567, 597
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	3 cut(s)	98, 567, 597
FspBI	CTAG	3 cut(s)	44, 57, 380
GluI	GCNGC	3 cut(s)	98, 567, 597
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	7 cut(s)	5, 61, 179, 218, 269, 653, 668
HapII	CCGG	1 cut(s)	197
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	244, 720
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	2 cut(s)	244, 720
HpyAV	CCTTC	2 cut(s)	482, 625
HpyCH4III	ACNGT	2 cut(s)	295, 714
HpyCH4V	TGCA	7 cut(s)	11, 186, 206, 444, 599, 750, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	101, 526
KpnI	GGTACC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	90, 408
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	3 cut(s)	302, 491, 726
Lsp1109I	GCAGC	3 cut(s)	84, 578, 583
MaeI	CTAG	3 cut(s)	44, 57, 380
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	92, 410
MboI	GATC	2 cut(s)	90, 408
MboII	GAAGA	6 cut(s)	163, 333, 361, 575, 637, 640
MhlI	GDGCHC	2 cut(s)	583, 731
MlsI	TGGCCA	3 cut(s)	5, 269, 668
MluNI	TGGCCA	3 cut(s)	5, 269, 668
MnlI	CCTC	1 cut(s)	254
Mox20I	TGGCCA	3 cut(s)	5, 269, 668
MscI	TGGCCA	3 cut(s)	5, 269, 668
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	3 cut(s)	5, 269, 668
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	90, 408
NlaIV	GGNNCC	4 cut(s)	41, 283, 323, 636
NmeAIII	GCCGAG	1 cut(s)	629
NspI	RCATGY	2 cut(s)	109, 193
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	99, 568, 598
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	4 cut(s)	41, 283, 323, 636
PspPI	GGNCC	5 cut(s)	124, 322, 396, 537, 635
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	41, 426
RsaNI	GTAC	2 cut(s)	40, 425
RseI	CAYNNNNRTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	98, 567, 597
Sau3AI	GATC	2 cut(s)	90, 408
Sau96I	GGNCC	5 cut(s)	124, 322, 396, 537, 635
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	583, 731
SetI	ASST	8 cut(s)	45, 81, 276, 287, 421, 450, 571, 779
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	5 cut(s)	124, 322, 396, 537, 635
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	3 cut(s)	44, 57, 380
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	5 cut(s)	18, 270, 285, 317, 663
TaaI	ACNGT	2 cut(s)	295, 714
TatI	WGTACW	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	3 cut(s)	97, 566, 596
TspDTI	ATGAA	2 cut(s)	164, 394
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	5 cut(s)	124, 322, 396, 537, 635
XceI	RCATGY	2 cut(s)	109, 193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 676
XmiI	GTMKAC	1 cut(s)	719
XspI	CTAG	3 cut(s)	44, 57, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.