Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

33704575 .. 33704954

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1281100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAACCTTTTCGACACGGCAATGTCATATTCTACAGCGAATTTCACATCTTCCATGTTCAATAATCTTCCCGCAATTGCATTTTTCATGGCCGTGATCTTTAGGATTGAGAAAGTGAACATTAGGAAACTTCATAGCCAAGCAAAGGTAGTGGGGCCTATAGTCACGGTTGGGAGAGCTATTATATTGACTCTGGTCAAAGGACCGGCAATTAATTTTTCCACGGATAAAGGGCAAAGGTCTAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009791 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022414 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

10.69

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AoxI	GGCC	2 cut(s)	90, 155
ApoI	RAATTY	1 cut(s)	40
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	155, 203
AvaII	GGWCC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	33, 77
BfmI	CTRYAG	2 cut(s)	33, 159
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	155, 203
BmiI	GGNNCC	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	92, 157
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	145
BsnI	GGCC	2 cut(s)	92, 157
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	92, 157
BspLI	GGNNCC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	33, 159
BsuRI	GGCC	2 cut(s)	92, 157
BtgI	CCRYGG	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	155, 203
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	2 cut(s)	55, 88
CviJI	RGCY	4 cut(s)	92, 138, 157, 179
CviKI_1	RGCY	4 cut(s)	92, 138, 157, 179
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	155
FaeI	CATG	2 cut(s)	58, 91
FaiI	YATR	7 cut(s)	28, 56, 89, 135, 161, 185, 250
FatI	CATG	2 cut(s)	54, 87
FauI	CCCGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	92, 157
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	58, 91
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	58, 91
Kzo9I	GATC	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	179, 219
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	42, 59
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	4 cut(s)	40, 75, 210, 214
MlyI	GAGTC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	20, 92
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	75
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	58, 91
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	155, 203
RseI	CAYNNNNRTG	2 cut(s)	20, 92
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	155, 203
SchI	GAGTC	1 cut(s)	184
SetI	ASST	4 cut(s)	9, 150, 181, 242
SfcI	CTRYAG	2 cut(s)	33, 159
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	20, 92
Sse9I	AATT	4 cut(s)	40, 75, 210, 214
SsiI	CCGC	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	12
TasI	AATT	4 cut(s)	40, 75, 210, 214
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	17, 76, 122
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.