Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000617

Physical Location & Seq

Genomic Coordinates Forward (+)

27265585 .. 27267979

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1192500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTAAGGGGTCCATGGCTGAGATGCTCAATCGGGCGATGCCGTTCATGGCTGTCACCTTCATGCAATTTGGGTACGCAGGGATGTCCATAATTTCAAAGTTTGCTCTAAACCATGGGATGAGCCCGCATGTCTTGGTAGTCTATCGGCATGCTGTGGCCACTGTTTTTATAGCTCCTTTTGCCGTTGTCTTCGATAGGAAAGTAAGGCCAAAGATGACCTTATCCATTTTCATCAAGATTGTGTTGCTTGGCCTATTAGAGCCGGTAATTGACCAGAACTTGTTCTATACCGGGATGAAGCTTACAACTGCAACTTTTGCATCTGCCATGTGCAATGTTCTTCCTGCTTTTGCATTCATAATGGCTTGGATTTTCAGGCTTGAGAAGATTAACTTGAGAAGCCTGCATAGTCTGGCAAAGATATTGGGGACCATAGTTACTGTGGGAGGAGCGATGCTTATGACTCTAATCAATGGACCCATGTTGAATTTTCCGTGGACAAGAAGAAATATCCATCAAGAATCTACAGTTTCCACAGTTCATCAAGATCCCATAAAAGGAGCTATCATGATTGCGGCTGGATGTTTCTGTTGGGCTGGTTTCATGATTCTCCAAGCGATTACTCTAAATTCATACCCCGCTGAGCTAACCCTAGCAACTTGGATATGCTTGGCGGGCACGGTTCAAGGAACTGCGGTGGCCCTAGCTTTCGAATGGAATAACCCCATAGTTTGGTCCATACACTTTGATTTTAAGCTTTTAGCTGCTGTTTACAGTGGAATAATCTGTTCAGGGATCGCTTATTACATTCAGGGAGTGGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCTTTTAGTCCTCTAAGCATGATTATTGTAGCCATTATGAGCTCCTTAATATTAGCTGAGATCATGTACTTGGGAAGAGTAATTGGAGCAATGGTCATTGTGATTGGCCTCTATATGGTTCTATGGGGAAAAAGCAAGGATCAACTTCCATCTGAATCAGAAAAAGATGATAACATGGAATTGGCTACAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001504 GO:0001505 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015186 GO:0015238 GO:0015318 GO:0015711 GO:0015800 GO:0015804 GO:0015807 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032870 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051938 GO:0055081 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:0099568 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

351

Amino Acids

38.55

Weight (kDa)

9.06

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	24 - 147	1.8e-13	EamA-like transporter family
EamA	PF00892	187 - 326	3e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39510
fragaria_vesca	FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica	MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica	Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis	pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis	RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata	RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora	Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa	Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha	Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana	Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	735
AciI	CCGC	5 cut(s)	128, 578, 642, 677, 698
AclWI	GGATC	3 cut(s)	545, 806, 1002
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	490, 631
AfaI	GTAC	2 cut(s)	77, 923
AfiI	CCNNNNNNNGG	3 cut(s)	560, 735, 970
AgsI	TTSAA	3 cut(s)	99, 490, 689
AluBI	AGCT	9 cut(s)	176, 304, 566, 649, 710, 760, 767, 897, 911
AluI	AGCT	9 cut(s)	176, 304, 566, 649, 710, 760, 767, 897, 911
Alw21I	GWGCWC	1 cut(s)	899
AlwI	GGATC	3 cut(s)	545, 806, 1002
AoxI	GGCC	5 cut(s)	159, 209, 253, 702, 961
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	2 cut(s)	490, 631
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	6 cut(s)	12, 432, 479, 703, 738, 839
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	714
AvaII	GGWCC	5 cut(s)	12, 432, 479, 738, 839
BaeGI	GKGCMC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	128, 899
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	2 cut(s)	525, 1012
BceAI	ACGGC	2 cut(s)	28, 170
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	2 cut(s)	656, 707
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	579, 768
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	2 cut(s)	580, 769
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	5 cut(s)	12, 432, 479, 738, 839
BmgT120I	GGNCC	6 cut(s)	12, 432, 479, 703, 738, 839
BmiI	GGNNCC	3 cut(s)	13, 433, 481
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	4 cut(s)	15, 30, 332, 447
BpiI	GAAGAC	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	404, 418
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	15, 115, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 735, 970
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	343, 951
BseDI	CCNNGG	3 cut(s)	15, 115, 497
BseGI	GGATG	4 cut(s)	90, 126, 303, 590
BseLI	CCNNNNNNNGG	3 cut(s)	560, 735, 970
BseMI	GCAATG	2 cut(s)	343, 951
BseMII	CTCAG	3 cut(s)	12, 636, 903
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	754
BshFI	GGCC	5 cut(s)	161, 211, 255, 704, 963
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	2 cut(s)	266, 294
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	560, 735, 970
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	161, 211, 255, 704, 963
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	3 cut(s)	128, 683, 899
Bsp143I	GATC	4 cut(s)	550, 798, 915, 994
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	2 cut(s)	15, 115
BspACI	CCGC	5 cut(s)	128, 578, 642, 677, 698
BspANI	GGCC	5 cut(s)	161, 211, 255, 704, 963
BspCNI	CTCAG	3 cut(s)	13, 637, 904
BspHI	TCATGA	2 cut(s)	570, 606
BspLI	GGNNCC	3 cut(s)	13, 433, 481
BspPI	GGATC	3 cut(s)	545, 806, 1002
BspT104I	TTCGAA	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	343, 951
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	15, 115, 497
BssMI	GATC	4 cut(s)	550, 798, 915, 994
BssT1I	CCWWGG	2 cut(s)	15, 115
Bst4CI	ACNGT	6 cut(s)	166, 445, 532, 541, 685, 779
Bst6I	CTCTTC	1 cut(s)	925
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	4 cut(s)	128, 153, 407, 679
BstDEI	CTNAG	5 cut(s)	6, 21, 645, 869, 912
BstDSI	CCRYGG	3 cut(s)	15, 115, 497
BstF5I	GGATG	4 cut(s)	90, 126, 303, 590
BstKTI	GATC	4 cut(s)	553, 801, 918, 997
BstMBI	GATC	4 cut(s)	550, 798, 915, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 320, 678
BstNSI	RCATGY	2 cut(s)	134, 155
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	683
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	5 cut(s)	161, 211, 255, 704, 963
BtgI	CCRYGG	3 cut(s)	15, 115, 497
BtgZI	GCGATG	2 cut(s)	53, 470
BtsCI	GGATG	4 cut(s)	90, 126, 303, 590
BtsIMutI	CAGTG	2 cut(s)	162, 784
Cac8I	GCNNGC	4 cut(s)	128, 153, 407, 679
CciI	TCATGA	2 cut(s)	570, 606
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	6 cut(s)	12, 432, 479, 703, 738, 839
Csp6I	GTAC	2 cut(s)	76, 922
CviQI	GTAC	2 cut(s)	76, 922
DdeI	CTNAG	5 cut(s)	6, 21, 645, 869, 912
DpnI	GATC	4 cut(s)	552, 800, 917, 996
DpnII	GATC	4 cut(s)	550, 798, 915, 994
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	925
EarI	CTCTTC	1 cut(s)	925
Ecl136II	GAGCTC	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	15, 115
Eco24I	GRGCYC	2 cut(s)	128, 899
Eco47I	GGWCC	5 cut(s)	12, 432, 479, 738, 839
Eco53kI	GAGCTC	1 cut(s)	897
EcoICRI	GAGCTC	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	839
EcoT14I	CCWWGG	2 cut(s)	15, 115
EcoT38I	GRGCYC	2 cut(s)	128, 899
ErhI	CCWWGG	2 cut(s)	15, 115
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 380, 412
FaqI	GGGAC	1 cut(s)	445
FauI	CCCGC	3 cut(s)	135, 649, 670
Fnu4HI	GCNGC	2 cut(s)	579, 768
FokI	GGATG	4 cut(s)	97, 133, 310, 597
FriOI	GRGCYC	2 cut(s)	128, 899
Fsp4HI	GCNGC	2 cut(s)	579, 768
FspBI	CTAG	2 cut(s)	656, 707
GluI	GCNGC	2 cut(s)	579, 768
HaeIII	GGCC	5 cut(s)	161, 211, 255, 704, 963
HapII	CCGG	2 cut(s)	266, 294
HindIII	AAGCTT	2 cut(s)	302, 758
HinfI	GANTC	4 cut(s)	466, 524, 610, 1010
HpaII	CCGG	2 cut(s)	266, 294
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	501, 775
Hpy188I	TCNGA	2 cut(s)	1009, 1015
Hpy188III	TCNNGA	5 cut(s)	238, 521, 548, 571, 607
Hpy8I	GTNNAC	2 cut(s)	501, 775
HpyAV	CCTTC	2 cut(s)	70, 823
HpyCH4III	ACNGT	6 cut(s)	166, 445, 532, 541, 685, 779
HpyCH4V	TGCA	6 cut(s)	67, 314, 323, 336, 356, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 320, 678
HpyF3I	CTNAG	5 cut(s)	6, 21, 645, 869, 912
Kzo9I	GATC	4 cut(s)	550, 798, 915, 994
LmnI	GCTCC	5 cut(s)	181, 452, 563, 902, 941
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	4 cut(s)	15, 30, 332, 447
MaeI	CTAG	2 cut(s)	656, 707
MaeIII	GTNAC	3 cut(s)	55, 439, 850
MalI	GATC	4 cut(s)	552, 800, 917, 996
MboI	GATC	4 cut(s)	550, 798, 915, 994
MboII	GAAGA	5 cut(s)	184, 335, 400, 519, 942
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	128, 683, 899
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	7 cut(s)	68, 93, 270, 490, 631, 936, 1034
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	4 cut(s)	443, 830, 876, 974
Mox20I	TGGCCA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	393, 756, 902, 1051
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	2 cut(s)	266, 294
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	182, 320, 678
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	2 cut(s)	15, 115
NdeII	GATC	4 cut(s)	550, 798, 915, 994
NlaIV	GGNNCC	3 cut(s)	13, 433, 481
NmuCI	GTSAC	2 cut(s)	55, 850
NspI	RCATGY	2 cut(s)	134, 155
NspV	TTCGAA	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	155
PagI	TCATGA	2 cut(s)	570, 606
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	524, 610, 1010
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	2 cut(s)	580, 769
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	839
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	1 cut(s)	839
PspN4I	GGNNCC	3 cut(s)	13, 433, 481
PspPI	GGNCC	6 cut(s)	12, 432, 479, 703, 738, 839
PspPPI	RGGWCCY	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	77, 923
RsaNI	GTAC	2 cut(s)	76, 922
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	393, 756, 902, 1051
SatI	GCNGC	2 cut(s)	579, 768
Sau3AI	GATC	4 cut(s)	550, 798, 915, 994
Sau96I	GGNCC	6 cut(s)	12, 432, 479, 703, 738, 839
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	128, 683, 899
SfaNI	GCATC	4 cut(s)	15, 30, 332, 447
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	5 cut(s)	12, 432, 479, 738, 839
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	383, 397
SmoI	CTYRAG	2 cut(s)	383, 397
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	7 cut(s)	68, 93, 270, 490, 631, 936, 1034
SsiI	CCGC	5 cut(s)	128, 578, 642, 677, 698
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	2 cut(s)	656, 707
SstI	GAGCTC	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	15, 115
TaaI	ACNGT	6 cut(s)	166, 445, 532, 541, 685, 779
TaqI	TCGA	2 cut(s)	195, 714
TasI	AATT	7 cut(s)	68, 93, 270, 490, 631, 936, 1034
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	3 cut(s)	524, 610, 1010
Tru1I	TTAA	4 cut(s)	393, 756, 902, 1051
Tru9I	TTAA	4 cut(s)	393, 756, 902, 1051
TscAI	CASTG	2 cut(s)	169, 784
TseFI	GTSAC	2 cut(s)	55, 850
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	55, 850
TspDTI	ATGAA	9 cut(s)	37, 52, 223, 314, 349, 533, 595, 624, 842
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	169, 784
Van91I	CCANNNNNTGG	1 cut(s)	735
VpaK11BI	GGWCC	5 cut(s)	12, 432, 479, 738, 839
XapI	RAATTY	2 cut(s)	490, 631
XceI	RCATGY	2 cut(s)	134, 155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	656, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.