RLG00000027373

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
11037702 .. 11039412
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027373

Sequence Viewer

Length: 1020 bp
ATGCCTAAGGAGTCGGTTTCACGGATGCTCACTCAAGCAAAGCCATTTGTGGCTGTGATTCTGATGCAATTTGGGTTAGCAGGAATGTCCATAATTACAAAGTTTGCTCTAAACCAAGGGATGAGCCAACATGTATTAGTTGTCTATAGGCACGCTGTTGCCTTTGTTTTTATAACTCCTTTTGCCCTTGTCTTTGATAGGAAAATAAGGCCAAAGATGACCCTTTCAGTCTTTTTCAAGATTGTGATCCTCGGCCTATTAGAGCCTGTAATCGACGGGAACTTGTTCTATACTGGGATGAAGCTGACAACAGCAACATTTACAATGGCCATGTGCAATGTTGTTCCTGCCTTTGCATTCATAATGGCTTGGATTTTCAGGCTTGAGATGGTTGATATTAGAAGACTTCACAGCCAGGCAAAGATATTGGGGACCATAGTGACTGTGGGAGGAGCTATGCTTATGACTCTGGTCAATGGACCCATGTTGACTCTTCCATGGACTAGAAGCAGTAGCCATCATCAAACTACAAGTTCCACAAATAGCCAAGATCCCATAAAGGGTGCTCTCATGATTACAGCTGGATGTTTCTGCTGGGCTATATACCCTGCTGAGCTCTCCCTAACAGCTTGGATATGTTTGATGGGTGCGTTGGAAGGTACCGTGGCAGCTCTAGCTTTTGAGTGGCATAACCCTGCAGCTTGGGCCATACACTTGGATTCTAAGTTGTTAGCTGCTGTTTACGGTGGAGTAATATGTTCTGGAGTGACTTATTATATTCAGGGGATGGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCATTTAATCCCCTATGCATGGTCATTGTAGCCATTTTGAGCTCCATCGCCTTGTCCGAAATACTGTACTTGGGAAGGGTAATGGGAGCAATGGTTATAGTAATTGGCCTGTATATGGTCCTCTGGGGTAAAAGTAAGGATCCTCTTCCACAACCAGATTCAGAAGCAGCTGAAGATAAAGTAGCTACAACAGTTTAA

Protein Analysis

340

Amino Acids

37.07

Weight (kDa)

9.0

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 18 - 156 2.5e-08 EamA-like transporter family
EamA PF00892 187 - 315 7.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39510
fragaria_vesca FvH4_7g21440 FvH4_7g21790 FvH4_7g21820
malus_domestica MD01G1122900.v1.1 MD01G1123000.v1.1 MD02G1281100.v1.1 MD02G1281200.v1.1 MD07G1192500.v1.1 MD07G1192600.v1.1
prunus_persica Prupe.2G230500_v2.0.a1 Prupe.2G230600_v2.0.a1 Prupe.2G230600_v2.0.a1
pyrus_communis pycom01g14990 pycom07g18200 pycom07g18220
rosa_chinensis RchiOBHm_Chr1g0337261 RchiOBHm_Chr1g0337271 RchiOBHm_Chr1g0366051 RchiOBHm_Chr1g0366071 RchiOBHm_Chr1g0366081 RchiOBHm_Chr1g0366091 RchiOBHm_Chr1g0366101 RchiOBHm_Chr2g0101901 RchiOBHm_Chr7g0232741 RchiOBHm_Chr7g0232791 RchiOBHm_Chr7g0232801 RchiOBHm_Chr7g0232841
rosa_laevigata RLG00000017109 RLG00000017110 RLG00000017111 RLG00000017114 RLG00000027368 RLG00000027369 RLG00000027370 RLG00000027371 RLG00000027373 RLG00000029288
rosa_multiflora Rmu_sc0000067.1_g000001 Rmu_sc0003987.1_g000005 Rmu_sc0003987.1_g000006 Rmu_sc0003987.1_g000010 Rmu_sc0004469.1_g000021 Rmu_sc0005795.1_g000006 Rmu_sc0017606.1_g000009 Rmu_sc0026503.1_g000001
rosa_roxburghii Rroxscaffold_3G00227870 Rroxscaffold_3G00227880 Rroxscaffold_4G00290500 Rroxscaffold_4G00290510 Rroxscaffold_4G00290520 Rroxscaffold_4G00290530 Rroxscaffold_4G00290560 Rroxscaffold_4G00314630
rosa_rugosa Rorug01G0133800.1 Rorug01G0133900.1 Rorug01G0326800 Rorug01G0326900 Rorug01G0327100 Rorug01G0327200 Rorug01G0327300
rosa_samantha Rh1AG153100 Rh1AG335500 Rh1BG117400 Rh1BG122400 Rh1BG295900 Rh1BG296200 Rh1BG296400 Rh1BG296500 Rh1BG296600 Rh1BG296700 Rh2BG156100 Rh2CG156200 Rh7CG449900
rosa_wichuraiana Rw1G012530 Rw1G029740 Rw1G029750 Rw1G029760 Rw2G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 659
AclWI GGATC 4 cut(s) 241, 545, 956, 969
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 1014
AfaI GTAC 2 cut(s) 661, 890
AfiI CCNNNNNNNGG 3 cut(s) 560, 841, 937
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 414
Alw21I GWGCWC 3 cut(s) 568, 618, 866
AlwI GGATC 4 cut(s) 241, 545, 956, 969
AoxI GGCC 5 cut(s) 209, 253, 327, 705, 928
ApeKI GCWGC 4 cut(s) 668, 698, 734, 989
Asp700I GAANNNNTTC 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 659
AspS9I GGNCC 5 cut(s) 432, 479, 705, 806, 940
AvaII GGWCC 4 cut(s) 432, 479, 806, 940
AxyI CCTNAGG 1 cut(s) 6
BalI TGGCCA 1 cut(s) 329
BamHI GGATCC 1 cut(s) 961
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 2 cut(s) 618, 866
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 3 cut(s) 568, 618, 866
BbvI GCAGC 4 cut(s) 680, 710, 721, 1001
BccI CCATC 5 cut(s) 382, 525, 637, 781, 875
BciT130I CCWGG 1 cut(s) 416
BfaI CTAG 2 cut(s) 504, 674
BfmI CTRYAG 2 cut(s) 145, 696
BisI GCNGC 4 cut(s) 669, 699, 735, 990
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 4 cut(s) 670, 700, 736, 991
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 4 cut(s) 432, 479, 806, 940
BmgT120I GGNCC 5 cut(s) 432, 479, 705, 806, 940
BmiI GGNNCC 4 cut(s) 433, 481, 661, 963
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 15, 54
BmuI ACTGGG 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 783
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 18, 404
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 115, 250, 497, 663
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 841, 937
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 6
Bse3DI GCAATG 2 cut(s) 343, 918
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 4 cut(s) 115, 250, 497, 663
BseGI GGATG 5 cut(s) 30, 126, 303, 590, 792
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 560, 841, 937
BseMI GCAATG 2 cut(s) 343, 918
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 4 cut(s) 680, 710, 721, 1001
BseYI CCCAGC 1 cut(s) 594
BshFI GGCC 5 cut(s) 211, 255, 329, 707, 930
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 3 cut(s) 568, 618, 866
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 560, 841, 937
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 5 cut(s) 211, 255, 329, 707, 930
Bsp1286I GDGCHC 3 cut(s) 568, 618, 866
Bsp143I GATC 3 cut(s) 246, 550, 961
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 497
BspANI GGCC 5 cut(s) 211, 255, 329, 707, 930
BspCNI CTCAG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 4 cut(s) 433, 481, 661, 963
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 4 cut(s) 241, 545, 956, 969
BspT107I GGYRCC 1 cut(s) 659
BsrDI GCAATG 2 cut(s) 343, 918
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 4 cut(s) 115, 250, 497, 663
BssMI GATC 3 cut(s) 246, 550, 961
BssT1I CCWWGG 2 cut(s) 115, 497
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 5 cut(s) 445, 664, 746, 888, 1015
Bst6I CTCTTC 2 cut(s) 498, 972
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 6, 612, 723
BstDSI CCRYGG 2 cut(s) 497, 663
BstF5I GGATG 5 cut(s) 30, 126, 303, 590, 792
BstKTI GATC 3 cut(s) 249, 553, 964
BstMBI GATC 3 cut(s) 246, 550, 961
BstMWI GCNNNNNNNGC 2 cut(s) 674, 704
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 134
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 2 cut(s) 145, 696
BstV1I GCAGC 4 cut(s) 680, 710, 721, 1001
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 550, 961
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 2 cut(s) 550, 961
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 5 cut(s) 211, 255, 329, 707, 930
BtgI CCRYGG 2 cut(s) 497, 663
BtgZI GCGATG 1 cut(s) 853
BtsCI GGATG 5 cut(s) 30, 126, 303, 590, 792
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 5 cut(s) 432, 479, 705, 806, 940
Csp6I GTAC 2 cut(s) 660, 889
CviAII CATG 6 cut(s) 131, 331, 484, 498, 571, 841
CviQI GTAC 2 cut(s) 660, 889
DdeI CTNAG 3 cut(s) 6, 612, 723
DpnI GATC 3 cut(s) 248, 552, 963
DpnII GATC 3 cut(s) 246, 550, 961
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 498, 972
EarI CTCTTC 2 cut(s) 498, 972
Ecl136II GAGCTC 2 cut(s) 616, 864
Eco130I CCWWGG 2 cut(s) 115, 497
Eco24I GRGCYC 2 cut(s) 618, 866
Eco47I GGWCC 4 cut(s) 432, 479, 806, 940
Eco53kI GAGCTC 2 cut(s) 616, 864
Eco57I CTGAAG 1 cut(s) 1014
Eco81I CCTNAGG 1 cut(s) 6
EcoICRI GAGCTC 2 cut(s) 616, 864
EcoO109I RGGNCCY 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 115, 497
EcoT22I ATGCAT 1 cut(s) 842
EcoT38I GRGCYC 2 cut(s) 618, 866
ErhI CCWWGG 2 cut(s) 115, 497
FaeI CATG 6 cut(s) 134, 334, 487, 501, 574, 844
FaqI GGGAC 1 cut(s) 445
FatI CATG 6 cut(s) 130, 330, 483, 497, 570, 840
Fnu4HI GCNGC 4 cut(s) 669, 699, 735, 990
FokI GGATG 5 cut(s) 37, 133, 310, 597, 799
FriOI GRGCYC 2 cut(s) 618, 866
Fsp4HI GCNGC 4 cut(s) 669, 699, 735, 990
FspBI CTAG 2 cut(s) 504, 674
GluI GCNGC 4 cut(s) 669, 699, 735, 990
GsaI CCCAGC 1 cut(s) 598
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 5 cut(s) 211, 255, 329, 707, 930
Hin1II CATG 6 cut(s) 134, 334, 487, 501, 574, 844
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 6 cut(s) 11, 58, 466, 490, 719, 980
Hpy166II GTNNAC 2 cut(s) 489, 742
Hpy188I TCNGA 3 cut(s) 63, 880, 985
Hpy188III TCNNGA 3 cut(s) 238, 571, 762
Hpy8I GTNNAC 2 cut(s) 489, 742
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 650, 790, 891
HpyCH4III ACNGT 5 cut(s) 445, 664, 746, 888, 1015
HpyCH4V TGCA 6 cut(s) 67, 336, 356, 698, 824, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 674, 704
HpyF3I CTNAG 3 cut(s) 6, 612, 723
Hsp92II CATG 6 cut(s) 134, 334, 487, 501, 574, 844
KpnI GGTACC 1 cut(s) 663
Kzo9I GATC 3 cut(s) 246, 550, 961
LmnI GCTCC 3 cut(s) 452, 869, 908
Lsp1109I GCAGC 4 cut(s) 680, 710, 721, 1001
LweI GCATC 2 cut(s) 15, 54
MaeI CTAG 2 cut(s) 504, 674
MaeIII GTNAC 3 cut(s) 439, 766, 817
MalI GATC 3 cut(s) 248, 552, 963
MboI GATC 3 cut(s) 246, 550, 961
MboII GAAGA 4 cut(s) 414, 485, 959, 1007
MflI RGATCY 2 cut(s) 550, 961
MhlI GDGCHC 3 cut(s) 568, 618, 866
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 3 cut(s) 68, 93, 924
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 3 cut(s) 20, 460, 484
MmeI TCCRAC 1 cut(s) 633
MnlI CCTC 5 cut(s) 260, 443, 797, 953, 975
Mox20I TGGCCA 1 cut(s) 329
Mph1103I ATGCAT 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 828, 1018
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 581, 992
MspR9I CCNGG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 674, 704
NcoI CCATGG 1 cut(s) 497
NdeII GATC 3 cut(s) 246, 550, 961
NlaIII CATG 6 cut(s) 134, 334, 487, 501, 574, 844
NlaIV GGNNCC 4 cut(s) 433, 481, 661, 963
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 439, 766, 817
NsiI ATGCAT 1 cut(s) 842
NspI RCATGY 1 cut(s) 134
PagI TCATGA 1 cut(s) 570
PciI ACATGT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 876
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 58, 719, 980
PkrI GCNGC 4 cut(s) 670, 700, 736, 991
PleI GAGTC 3 cut(s) 19, 460, 484
PpsI GAGTC 3 cut(s) 19, 460, 484
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 470
PsiI TTATAA 1 cut(s) 173
Psp124BI GAGCTC 2 cut(s) 618, 866
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 433, 481, 661, 963
PspPI GGNCC 5 cut(s) 432, 479, 705, 806, 940
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 550, 961
PvuII CAGCTG 2 cut(s) 581, 992
RsaI GTAC 2 cut(s) 661, 890
RsaNI GTAC 2 cut(s) 660, 889
SacI GAGCTC 2 cut(s) 618, 866
SaqAI TTAA 2 cut(s) 828, 1018
SatI GCNGC 4 cut(s) 669, 699, 735, 990
Sau3AI GATC 3 cut(s) 246, 550, 961
Sau96I GGNCC 5 cut(s) 432, 479, 705, 806, 940
SchI GAGTC 3 cut(s) 20, 460, 484
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 3 cut(s) 568, 618, 866
SfaNI GCATC 2 cut(s) 15, 54
SfcI CTRYAG 2 cut(s) 145, 696
SinI GGWCC 4 cut(s) 432, 479, 806, 940
SmlI CTYRAG 2 cut(s) 33, 383
SmoI CTYRAG 2 cut(s) 33, 383
Sse9I AATT 3 cut(s) 68, 93, 924
SspMI CTAG 2 cut(s) 504, 674
SstI GAGCTC 2 cut(s) 618, 866
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 2 cut(s) 115, 497
TaaI ACNGT 5 cut(s) 445, 664, 746, 888, 1015
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 68, 93, 924
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 3 cut(s) 58, 719, 980
Tru1I TTAA 2 cut(s) 828, 1018
Tru9I TTAA 2 cut(s) 828, 1018
TseFI GTSAC 3 cut(s) 439, 766, 817
TseI GCWGC 4 cut(s) 668, 698, 734, 989
Tsp45I GTSAC 3 cut(s) 439, 766, 817
TspDTI ATGAA 3 cut(s) 314, 349, 809
TspGWI ACGGA 1 cut(s) 37
VpaK11BI GGWCC 4 cut(s) 432, 479, 806, 940
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 504, 674
Zsp2I ATGCAT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.